Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   U6C02_RS16210 Genome accession   NZ_CP143843
Coordinates   3239390..3240640 (-) Length   416 a.a.
NCBI ID   WP_043867100.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3234390..3245640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS16195 (U6C02_16195) rny 3234976..3236535 (-) 1560 WP_003154140.1 ribonuclease Y -
  U6C02_RS16200 (U6C02_16200) - 3236828..3238009 (-) 1182 WP_003154142.1 serine hydrolase domain-containing protein -
  U6C02_RS16205 (U6C02_16205) recA 3238176..3239219 (-) 1044 WP_003154145.1 recombinase RecA Machinery gene
  U6C02_RS16210 (U6C02_16210) cinA 3239390..3240640 (-) 1251 WP_043867100.1 competence/damage-inducible protein A Machinery gene
  U6C02_RS16215 (U6C02_16215) pgsA 3240658..3241239 (-) 582 WP_003154147.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  U6C02_RS16220 (U6C02_16220) - 3241313..3242212 (-) 900 WP_003154148.1 helix-turn-helix domain-containing protein -
  U6C02_RS16225 (U6C02_16225) - 3242231..3243022 (-) 792 WP_003154149.1 DUF3388 domain-containing protein -
  U6C02_RS16230 (U6C02_16230) - 3243150..3243407 (-) 258 WP_003154150.1 DUF3243 domain-containing protein -
  U6C02_RS16235 (U6C02_16235) ymfI 3243483..3244211 (-) 729 WP_003154151.1 elongation factor P 5-aminopentanone reductase -
  U6C02_RS16240 (U6C02_16240) yfmH 3244270..3245556 (-) 1287 WP_052585943.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45106.44 Da        Isoelectric Point: 5.3789

>NTDB_id=931535 U6C02_RS16210 WP_043867100.1 3239390..3240640(-) (cinA) [Bacillus velezensis strain YM-3]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=931535 U6C02_RS16210 WP_043867100.1 3239390..3240640(-) (cinA) [Bacillus velezensis strain YM-3]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGATCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGTTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385