Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V2I03_RS11975 Genome accession   NZ_CP143583
Coordinates   2489822..2491066 (-) Length   414 a.a.
NCBI ID   WP_153853923.1    Uniprot ID   -
Organism   Enterococcus faecalis strain IDRL-7639     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2484822..2496066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I03_RS11955 - 2485292..2485678 (-) 387 WP_002359008.1 RicAFT regulatory complex protein RicA family protein -
  V2I03_RS11960 - 2485752..2486549 (-) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  V2I03_RS11965 rny 2486709..2488265 (-) 1557 WP_002354863.1 ribonuclease Y -
  V2I03_RS11970 recA 2488662..2489708 (-) 1047 WP_002354860.1 recombinase RecA Machinery gene
  V2I03_RS11975 cinA 2489822..2491066 (-) 1245 WP_153853923.1 competence/damage-inducible protein A Machinery gene
  V2I03_RS11980 - 2491258..2492463 (+) 1206 WP_002359001.1 hypothetical protein -
  V2I03_RS11985 - 2492542..2493171 (-) 630 WP_173963706.1 NAD(P)-dependent oxidoreductase -
  V2I03_RS11990 - 2493230..2493655 (-) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  V2I03_RS11995 - 2493744..2494127 (-) 384 WP_002358999.1 YccF domain-containing protein -
  V2I03_RS12000 - 2494291..2495082 (+) 792 WP_002372754.1 hypothetical protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45202.30 Da        Isoelectric Point: 4.7238

>NTDB_id=929871 V2I03_RS11975 WP_153853923.1 2489822..2491066(-) (cinA) [Enterococcus faecalis strain IDRL-7639]
MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRSDLIVLCGGLGPTEDDLTKQV
VAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLAIEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMF
QQAARPLLIDAFPQEEQLISRVLRFYGIGESQLVTEIQSLIAHQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE
EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQNGQTVTAAESLTAGLFQSTLGEIAGASKIFKGGFVTYSQETKENFLGISH
ELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDPIEGQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRHSAVM
RGLDLLRRRIINKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=929871 V2I03_RS11975 WP_153853923.1 2489822..2491066(-) (cinA) [Enterococcus faecalis strain IDRL-7639]
ATGAAAGCAGAAATCATTGCAGTCGGAACAGAGTTATTACTGGGACAAGTAGTGAATACCAACGCAACCTTTTTATCAGA
AGAGTTAGCTGCGCTAGGCATCGATGTTTACTATCAGACCGTTGTTGGTGATAACGGCGGCCGCTTAGAAACGCTACTAA
CAGAAGCAGAACAAAGAAGTGATTTAATTGTCCTTTGTGGAGGGCTAGGACCTACAGAAGACGATTTAACCAAGCAAGTT
GTCGCACAACATCTCCATAAATCATTAGTAGAAGATCAAGAAGGATTGAACCGCTTACACCAGTTTTTCCAACAGTCTAA
GCGGCCAATGACGGAAAATAATCTACGACAAGTGTTAGCCATTGAAGGTGGACAAGTTCTTCAAAACCCGACAGGATTAG
CGGTTGGTTCTTTCGTAACAGAAGGGACAACAAGCTATTTGCTCTTACCAGGGCCGCCCAATGAATTAATTCCGATGTTC
CAACAAGCGGCACGACCTTTATTGATTGATGCGTTTCCACAAGAAGAACAATTGATTTCAAGAGTCTTGCGTTTTTATGG
GATTGGTGAATCACAGCTGGTGACCGAGATTCAATCGTTGATTGCGCACCAAACGAATCCAACCATTGCGCCTTATGCTA
AGCCTAATGAAGTGACACTTCGTTTAACAGTTAAAACAAAAGACTTAGTAGCTGGCGAAGAATTATTAACAGCGACGGAA
GAAAAGGTTTTAGCTAAAGTGGGAGACTATTTTTATGGGTATGGTGATGACAATAGTTTAGCCAAGGTAACAGTGGATTT
GTTATTACAAAACGGACAAACTGTCACGGCTGCTGAGAGCCTCACCGCTGGCCTATTCCAAAGTACACTGGGGGAAATTG
CGGGTGCTTCGAAGATTTTTAAGGGAGGCTTCGTGACGTATTCGCAAGAAACAAAAGAGAACTTTTTAGGGATTTCTCAT
GAACTTTTAGAAGAACATGGCACGGTAAGTGAAGCGTGTGCCAAAGAAATGGCAGAGAAAGCGCGTCAGTTAGCTAAATC
TAACTATGGTTTATCATTTACTGGGGTCGCTGGTGACCCAATCGAAGGTCAACCGACAGGCACTGTTTGGATTGGGCTGG
CGGAAGAAGGCCAACCAACTGTTGCAGAATGTTTCCATTTTAACCGTGACCGAAATTATATTAGACATAGTGCGGTTATG
CGAGGGTTAGATCTTTTGCGACGCCGAATCATTAATAAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.773

100

0.529
  cinA Streptococcus mutans UA159

52.392

100

0.529
  cinA Streptococcus mitis NCTC 12261

51.537

100

0.527
  cinA Streptococcus pneumoniae TIGR4

50.827

100

0.519
  cinA Streptococcus pneumoniae D39

50.591

100

0.517
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.514
  cinA Streptococcus pneumoniae R6

50.355

100

0.514
  cinA Bacillus subtilis subsp. subtilis str. 168

48.522

98.068

0.476
  cinA Streptococcus suis isolate S10

43.796

99.275

0.435