Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V2I71_RS08685 Genome accession   NZ_CP143575
Coordinates   1785341..1786573 (+) Length   410 a.a.
NCBI ID   WP_057278384.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain GR2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1780341..1791573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS08660 (V2I71_08660) ymfI 1781551..1782276 (+) 726 WP_048684725.1 elongation factor P 5-aminopentanone reductase -
  V2I71_RS08665 (V2I71_08665) - 1782359..1782616 (+) 258 WP_057278386.1 DUF3243 domain-containing protein -
  V2I71_RS08670 (V2I71_08670) - 1782860..1783651 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  V2I71_RS08675 (V2I71_08675) - 1783669..1784568 (+) 900 WP_191928491.1 RodZ domain-containing protein -
  V2I71_RS08680 (V2I71_08680) pgsA 1784733..1785317 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V2I71_RS08685 (V2I71_08685) cinA 1785341..1786573 (+) 1233 WP_057278384.1 competence/damage-inducible protein A Machinery gene
  V2I71_RS08690 (V2I71_08690) recA 1786922..1787968 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  V2I71_RS08695 (V2I71_08695) rny 1788322..1789881 (+) 1560 WP_057278383.1 ribonuclease Y -
  V2I71_RS08700 (V2I71_08700) - 1790034..1790831 (+) 798 WP_330502335.1 TIGR00282 family metallophosphoesterase -
  V2I71_RS08705 (V2I71_08705) spoVS 1791005..1791265 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44953.27 Da        Isoelectric Point: 5.0424

>NTDB_id=929742 V2I71_RS08685 WP_057278384.1 1785341..1786573(+) (cinA) [Peribacillus frigoritolerans strain GR2]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILGRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=929742 V2I71_RS08685 WP_057278384.1 1785341..1786573(+) (cinA) [Peribacillus frigoritolerans strain GR2]
ATGGATGCAGAAATCATTGCAGTGGGCTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGGGATAACGACCGTCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGATTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCAATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTAGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCAGGAATGGTTTTGTCCAAATCCGGGATTACATATATGCTCCTGCCTGGTCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTTTACGGTTCTACGG
TATAGGTGAAGCTGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTGGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCCAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTGGCAGGGTCGGCAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGTTTTACGGGTGTTGCAGGGCCGGATGAACAAGAAGGCAAGCCTGTTGGTACAGTATTTATTGGCATTT
CCTATCGCGATGGAAACACTCATTTCAAGGAGTTGAATCTTTCCGGTAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAA
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

45

100

0.461
  cinA Streptococcus mitis SK321

45

100

0.461
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.456
  cinA Streptococcus mitis NCTC 12261

44.524

100

0.456
  cinA Streptococcus pneumoniae R6

44.524

100

0.456
  cinA Streptococcus pneumoniae D39

44.286

100

0.454
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

38.847

97.317

0.378