Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V1501_RS21340 Genome accession   NZ_CP143545
Coordinates   4253643..4254164 (-) Length   173 a.a.
NCBI ID   WP_409290870.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4248643..4259164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS21305 (V1501_21305) - 4248832..4249065 (-) 234 WP_409290865.1 hypothetical protein -
  V1501_RS21310 (V1501_21310) ceuB 4249265..4250215 (+) 951 WP_409290866.1 ABC transporter permease Machinery gene
  V1501_RS21315 (V1501_21315) - 4250208..4251160 (+) 953 Protein_4137 iron chelate uptake ABC transporter family permease subunit -
  V1501_RS21320 (V1501_21320) - 4251157..4251921 (+) 765 WP_409290867.1 ABC transporter ATP-binding protein -
  V1501_RS21325 (V1501_21325) - 4251935..4252879 (+) 945 WP_409290868.1 siderophore ABC transporter substrate-binding protein -
  V1501_RS21330 (V1501_21330) - 4252895..4253209 (+) 315 WP_409290869.1 antibiotic biosynthesis monooxygenase family protein -
  V1501_RS21335 (V1501_21335) rpsR 4253361..4253597 (-) 237 WP_409293491.1 30S ribosomal protein S18 -
  V1501_RS21340 (V1501_21340) ssbA 4253643..4254164 (-) 522 WP_409290870.1 single-stranded DNA-binding protein Machinery gene
  V1501_RS21345 (V1501_21345) rpsF 4254222..4254509 (-) 288 WP_409290871.1 30S ribosomal protein S6 -
  V1501_RS21350 (V1501_21350) ychF 4255461..4256561 (-) 1101 WP_409290872.1 redox-regulated ATPase YchF -
  V1501_RS21355 (V1501_21355) - 4256757..4257311 (-) 555 WP_409290873.1 sugar O-acetyltransferase -
  V1501_RS21360 (V1501_21360) - 4257331..4257531 (-) 201 WP_409290874.1 DUF951 domain-containing protein -
  V1501_RS21365 (V1501_21365) - 4257553..4258437 (-) 885 WP_409290875.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19466.23 Da        Isoelectric Point: 4.8192

>NTDB_id=929535 V1501_RS21340 WP_409290870.1 4253643..4254164(-) (ssbA) [Peribacillus sp. SCS-37]
MMNRVILVGRLTKDPELRYTPNGVPVATFTLAVNRTFTNQQGEREADFINCVIWRKPAENVANYLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRNSNAGGGDRNEGGFYGGRQQESSYGQQNQNQNQPQRNNNNNNYTRVDEDPFANN
GQTIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=929535 V1501_RS21340 WP_409290870.1 4253643..4254164(-) (ssbA) [Peribacillus sp. SCS-37]
ATGATGAACCGCGTTATTCTTGTGGGACGTTTAACAAAAGATCCAGAGCTGCGCTATACTCCAAACGGAGTGCCGGTTGC
AACTTTTACATTGGCTGTTAATCGTACTTTTACAAACCAGCAGGGTGAACGTGAAGCGGACTTTATTAATTGTGTGATAT
GGCGCAAACCAGCTGAGAATGTCGCAAACTACCTGAAAAAAGGAAGTTTGGCAGGCGTTGACGGCCGGGTCCAGACTCGC
AACTATGAAGGCCAGGATGGTAAGAGAGTATATGTCACTGAAATACTGGCTGAGAGCGTCCAATTCCTTGAACCTAGGAA
CAGCAATGCTGGCGGTGGAGATAGGAATGAAGGCGGGTTCTACGGCGGGCGCCAGCAGGAGTCCTCGTACGGACAGCAAA
ATCAAAATCAGAATCAACCACAACGAAACAACAACAACAATAACTATACACGCGTAGACGAAGATCCATTTGCGAATAAC
GGACAAACCATCGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.48

100

0.688
  ssb Latilactobacillus sakei subsp. sakei 23K

55.932

100

0.572
  ssb Neisseria gonorrhoeae MS11

36.667

100

0.382
  ssb Neisseria meningitidis MC58

36.667

100

0.382
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

61.272

0.382
  ssb Glaesserella parasuis strain SC1401

36.111

100

0.376
  ssb Vibrio cholerae strain A1552

34.239

100

0.364