Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   V1501_RS21310 Genome accession   NZ_CP143545
Coordinates   4249265..4250215 (+) Length   316 a.a.
NCBI ID   WP_409290866.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-37     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 4244265..4255215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1501_RS21285 (V1501_21285) - 4244760..4245467 (+) 708 WP_409290861.1 HAD family hydrolase -
  V1501_RS21290 (V1501_21290) - 4245434..4245592 (-) 159 WP_409290862.1 hypothetical protein -
  V1501_RS21295 (V1501_21295) - 4245668..4246648 (+) 981 WP_409290863.1 LacI family DNA-binding transcriptional regulator -
  V1501_RS21300 (V1501_21300) - 4246700..4248730 (-) 2031 WP_409290864.1 catalase -
  V1501_RS21305 (V1501_21305) - 4248832..4249065 (-) 234 WP_409290865.1 hypothetical protein -
  V1501_RS21310 (V1501_21310) ceuB 4249265..4250215 (+) 951 WP_409290866.1 ABC transporter permease Machinery gene
  V1501_RS21315 (V1501_21315) - 4250208..4251160 (+) 953 Protein_4137 iron chelate uptake ABC transporter family permease subunit -
  V1501_RS21320 (V1501_21320) - 4251157..4251921 (+) 765 WP_409290867.1 ABC transporter ATP-binding protein -
  V1501_RS21325 (V1501_21325) - 4251935..4252879 (+) 945 WP_409290868.1 siderophore ABC transporter substrate-binding protein -
  V1501_RS21330 (V1501_21330) - 4252895..4253209 (+) 315 WP_409290869.1 antibiotic biosynthesis monooxygenase family protein -
  V1501_RS21335 (V1501_21335) rpsR 4253361..4253597 (-) 237 WP_409293491.1 30S ribosomal protein S18 -
  V1501_RS21340 (V1501_21340) ssbA 4253643..4254164 (-) 522 WP_409290870.1 single-stranded DNA-binding protein Machinery gene
  V1501_RS21345 (V1501_21345) rpsF 4254222..4254509 (-) 288 WP_409290871.1 30S ribosomal protein S6 -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34662.97 Da        Isoelectric Point: 10.0099

>NTDB_id=929534 V1501_RS21310 WP_409290866.1 4249265..4250215(+) (ceuB) [Peribacillus sp. SCS-37]
MKKRYLILVCLALSALSLFVGVSSIPPGALLDTESEEFQIFMVSRLPRLISILLAGVGMSIAGLIMQQLSRNKFVSPTTA
GTLDAAKLGILISMLYVANDSILLKMGFAFVFSLAGTLLFMKILDRIKFKDAIFIPLIGLMFGNILSSLSTFMAYRADVI
QNISSWMQGDFSRIISGRYELLYISIPVILLAYIFAGRFTIAGMGEDFSRNLGLPYRFVVNLGLILVALITTTVVLTVGL
IPFLGLIIPNIVSIMKGDHLQKTLPHTALLGAIFLLICDILGRVVIYPYEITISLMVGVIGSGIFLFLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=929534 V1501_RS21310 WP_409290866.1 4249265..4250215(+) (ceuB) [Peribacillus sp. SCS-37]
ATGAAAAAGAGGTACTTAATTTTAGTCTGTCTGGCACTTTCAGCTCTTTCACTTTTTGTTGGAGTCAGCAGCATCCCGCC
AGGAGCACTGCTTGATACTGAATCAGAGGAATTTCAGATCTTTATGGTCAGCCGCCTGCCGAGGCTGATTTCAATCCTGC
TCGCAGGCGTCGGCATGAGTATTGCCGGTTTAATCATGCAGCAGCTGAGCCGCAATAAATTTGTTTCGCCGACTACAGCC
GGGACATTGGATGCTGCAAAGCTTGGCATTCTCATCTCCATGCTGTATGTCGCCAATGATTCCATTCTGTTAAAAATGGG
ATTCGCATTTGTTTTTTCACTTGCTGGCACTCTGTTATTCATGAAGATTTTGGACCGCATCAAATTTAAGGATGCCATCT
TCATCCCGCTTATCGGGCTGATGTTTGGAAATATCCTGTCTTCTCTTTCAACGTTCATGGCCTATCGTGCGGATGTTATT
CAGAATATTTCATCATGGATGCAGGGAGATTTTTCGCGGATTATATCAGGGCGTTATGAGCTTCTGTATATCAGTATCCC
TGTCATTCTGCTAGCTTACATATTTGCGGGCCGCTTCACCATTGCAGGAATGGGGGAGGATTTCTCCAGGAATCTGGGCC
TGCCCTACCGCTTTGTTGTCAACCTGGGGCTGATACTAGTTGCCCTCATTACGACCACGGTTGTGCTGACAGTCGGTCTT
ATTCCTTTTTTGGGACTGATTATCCCCAATATTGTATCAATTATGAAAGGGGACCATCTGCAGAAGACTCTGCCGCACAC
AGCTCTTCTCGGCGCCATCTTCCTATTGATATGCGATATCCTGGGACGGGTGGTTATCTACCCTTATGAAATTACGATCA
GTTTGATGGTTGGTGTAATCGGCAGCGGGATCTTCCTCTTCCTCTTATTCAGGAGGAAAGCCTATGCGTAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.035

99.051

0.525