Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VR487_RS02475 Genome accession   NZ_CP143431
Coordinates   533247..534515 (-) Length   422 a.a.
NCBI ID   WP_263257118.1    Uniprot ID   -
Organism   Shewanella oncorhynchi strain B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528247..539515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR487_RS02440 (VR487_02440) - 528252..529178 (+) 927 WP_198573102.1 exopolyphosphatase -
  VR487_RS02445 (VR487_02445) - 529256..529792 (-) 537 WP_198573101.1 thioredoxin family protein -
  VR487_RS02450 (VR487_02450) mutT 530023..530415 (-) 393 WP_198573100.1 8-oxo-dGTP diphosphatase MutT -
  VR487_RS02455 (VR487_02455) yacG 530495..530704 (-) 210 WP_006083355.1 DNA gyrase inhibitor YacG -
  VR487_RS02460 (VR487_02460) zapD 530778..531512 (-) 735 WP_198573099.1 cell division protein ZapD -
  VR487_RS02465 (VR487_02465) coaE 531505..532122 (-) 618 WP_263257122.1 dephospho-CoA kinase -
  VR487_RS02470 (VR487_02470) pilD 532288..533214 (-) 927 WP_263257120.1 prepilin peptidase Machinery gene
  VR487_RS02475 (VR487_02475) pilC 533247..534515 (-) 1269 WP_263257118.1 type II secretion system F family protein Machinery gene
  VR487_RS02480 (VR487_02480) pilB 534569..536278 (-) 1710 WP_330147971.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VR487_RS02485 (VR487_02485) - 536350..536784 (-) 435 WP_306683490.1 pilin -
  VR487_RS02490 (VR487_02490) nadC 537532..538413 (-) 882 WP_105250404.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VR487_RS02495 (VR487_02495) ampD 538672..539220 (+) 549 WP_263169631.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46115.25 Da        Isoelectric Point: 10.1188

>NTDB_id=929030 VR487_RS02475 WP_263257118.1 533247..534515(-) (pilC) [Shewanella oncorhynchi strain B]
MATATTVRKSRGKKNEQKSQPKIYTFEWKGVNRDGKKTAGELRGATAAEIRSQLKSQGVNPKSVRKQSSPLFKLGEANIT
PMDIAMMTRQVATMLAAGVPLVTTFELLGRGHEKAKMRELLGTILTEIQSGIPLSDAMRPHRRYFDELYVDLVAAGEHSG
SLDLVFDRVATYREKTEALKSKIKKAMFYPAAVVIVALLVTTLLLLFVVPQFEEIFKGFGAELPAFTQLVLHISRGLQSS
WYIFLAAIVGGVFLFVRAHRNSQMVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAV
YRKAILNIRQEVMAGMQMNVAMQTTGLFPDMLVQMVMIGEESGSLDNMLNKVSTIYEMQVDDAVDGLSSLIEPIMMVVIG
TVVGGLIVAMYLPIFQMGKIVS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=929030 VR487_RS02475 WP_263257118.1 533247..534515(-) (pilC) [Shewanella oncorhynchi strain B]
ATGGCTACGGCAACAACAGTAAGAAAGTCTCGCGGCAAAAAAAACGAGCAAAAAAGCCAGCCCAAAATCTATACCTTCGA
ATGGAAAGGCGTAAATCGCGACGGTAAAAAAACGGCAGGGGAGCTTAGAGGTGCAACCGCAGCCGAAATTCGTAGCCAGC
TAAAATCCCAAGGAGTAAACCCTAAGAGCGTTCGTAAGCAGTCATCTCCACTATTTAAATTAGGTGAAGCCAACATCACC
CCTATGGATATTGCCATGATGACACGTCAAGTCGCGACTATGTTGGCGGCAGGCGTTCCTTTGGTAACGACATTTGAACT
ACTCGGCCGTGGCCATGAAAAAGCTAAAATGCGGGAATTACTGGGTACTATTTTAACCGAAATTCAATCGGGTATTCCCT
TATCCGATGCTATGCGCCCCCATAGACGTTACTTCGACGAATTATATGTTGACTTAGTCGCCGCGGGTGAGCACTCAGGT
TCACTCGATTTGGTTTTCGATCGCGTCGCCACCTATAGAGAAAAAACGGAAGCGCTAAAATCAAAAATTAAAAAAGCCAT
GTTCTATCCTGCAGCTGTCGTCATAGTCGCGCTTTTAGTCACGACATTGTTATTACTCTTTGTCGTACCTCAATTCGAGG
AAATTTTTAAGGGCTTTGGTGCAGAACTGCCCGCCTTTACACAACTGGTACTGCATATTTCCCGCGGCTTACAATCCTCT
TGGTATATCTTTTTAGCCGCTATTGTCGGCGGCGTATTTTTGTTTGTACGCGCGCACCGAAACTCGCAAATGGTGCGAGA
TAGAGTCGATGAAGCCGTGCTAAAAATCCCAGCCATTGGACCGATTTTACACAAAGGTGCCATGGCTCGTTTCGCCCGCA
CCTTAGCTACCACATTTGCAGCAGGTGTGCCGTTAATTGATGGCTTAGAATCCGCCGCTGGCGCATCGGGTAATGCCGTT
TATCGCAAAGCCATATTGAATATTCGCCAAGAGGTCATGGCGGGAATGCAGATGAATGTCGCGATGCAAACCACAGGGCT
TTTTCCCGATATGTTAGTGCAGATGGTGATGATAGGCGAAGAATCCGGCTCGCTGGATAACATGCTCAACAAAGTCTCAA
CCATCTATGAAATGCAGGTCGACGATGCGGTTGATGGTTTATCAAGCCTAATTGAACCTATTATGATGGTAGTCATAGGT
ACTGTGGTCGGCGGGTTAATTGTCGCTATGTATCTTCCTATCTTCCAAATGGGTAAAATCGTCAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

93.839

0.514
  pilC Legionella pneumophila strain ERS1305867

49.383

95.972

0.474
  pilC Acinetobacter baumannii D1279779

48.995

94.313

0.462
  pilC Acinetobacter baylyi ADP1

48.363

94.076

0.455
  pilC Vibrio cholerae strain A1552

47.462

93.365

0.443
  pilC Vibrio campbellii strain DS40M4

44.776

95.261

0.427
  pilG Neisseria meningitidis 44/76-A

41.687

95.498

0.398
  pilG Neisseria gonorrhoeae MS11

41.687

95.498

0.398