Detailed information NTG0929029

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VR487_RS02470
• Genome accession: NZ_CP143431
• Coordinates: 532288..533214 (-)
• Length: 308 a.a.
• NCBI ID: WP_263257120.1
• Uniprot ID: -
• Organism: Shewanella oncorhynchi strain B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 527288..538214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VR487_RS02440 (VR487_02440)	-	528252..529178 (+)	927	WP_198573102.1	exopolyphosphatase	-
VR487_RS02445 (VR487_02445)	-	529256..529792 (-)	537	WP_198573101.1	thioredoxin family protein	-
VR487_RS02450 (VR487_02450)	mutT	530023..530415 (-)	393	WP_198573100.1	8-oxo-dGTP diphosphatase MutT	-
VR487_RS02455 (VR487_02455)	yacG	530495..530704 (-)	210	WP_006083355.1	DNA gyrase inhibitor YacG	-
VR487_RS02460 (VR487_02460)	zapD	530778..531512 (-)	735	WP_198573099.1	cell division protein ZapD	-
VR487_RS02465 (VR487_02465)	coaE	531505..532122 (-)	618	WP_263257122.1	dephospho-CoA kinase	-
VR487_RS02470 (VR487_02470)	pilD	532288..533214 (-)	927	WP_263257120.1	prepilin peptidase	Machinery gene
VR487_RS02475 (VR487_02475)	pilC	533247..534515 (-)	1269	WP_263257118.1	type II secretion system F family protein	Machinery gene
VR487_RS02480 (VR487_02480)	pilB	534569..536278 (-)	1710	WP_330147971.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VR487_RS02485 (VR487_02485)	-	536350..536784 (-)	435	WP_306683490.1	pilin	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34338.72 Da
• Isoelectric Point: 6.8235

>NTDB_id=929029 VR487_RS02470 WP_263257120.1 532288..533214(-) (pilD) [Shewanella oncorhynchi strain B]
MSEFISLLGHSFDQSPWLFITLSFIFAATIGSFLNVVIHRFPVMMKREWQQECNQYLQEYHEDIVKKIGIDQLNTPIDSF
PEKYNLVVPGSACPMCKTAIKPWHNLPVFGWLILKGKCAACHAPISARYPIIEFITGLLVATLAWHFGPSWQFVFASILT
FVLIALTGIDLDEMLLPDQMTLPLLWLGLIINLNHTFASPTDAIIGAAAGYLSLWSIFWLFKILTGKEGMGYGDFKLLAV
FGAWLGWQMLPLVILLSSLGGAVVGITMIVSKRLKQGNPIPFGPYIAAAGWIALLFGQQIVDWYLGTL

Nucleotide

• Length: 927 bp

>NTDB_id=929029 VR487_RS02470 WP_263257120.1 532288..533214(-) (pilD) [Shewanella oncorhynchi strain B]
ATGTCAGAATTTATCTCTCTTTTGGGCCACTCTTTTGATCAGAGTCCTTGGCTCTTTATTACGCTAAGCTTTATTTTTGC
CGCCACCATAGGCAGTTTTTTAAACGTAGTGATCCACAGATTTCCTGTGATGATGAAACGAGAATGGCAGCAAGAATGTA
ATCAGTATTTACAGGAATACCACGAAGATATAGTCAAAAAAATAGGCATAGACCAACTCAATACACCTATAGATAGCTTC
CCCGAAAAATATAATCTTGTGGTGCCAGGCTCTGCTTGCCCTATGTGCAAAACGGCGATTAAACCTTGGCATAATTTACC
TGTATTCGGTTGGTTAATACTCAAAGGAAAATGCGCCGCCTGTCACGCACCGATTTCCGCCCGCTACCCTATTATTGAAT
TCATCACAGGGCTACTTGTTGCGACTTTAGCGTGGCACTTTGGTCCAAGCTGGCAATTTGTCTTTGCGAGCATACTGACA
TTTGTACTTATTGCCCTTACTGGTATCGATCTTGATGAGATGCTGCTCCCCGACCAAATGACGTTACCGTTACTTTGGCT
CGGCTTGATCATCAATCTAAATCATACCTTTGCGAGCCCAACCGATGCCATTATCGGTGCGGCAGCAGGCTATTTAAGCT
TGTGGTCCATTTTTTGGCTATTTAAGATCCTCACTGGCAAGGAAGGCATGGGCTATGGGGACTTTAAACTGCTCGCCGTT
TTTGGTGCTTGGCTCGGCTGGCAAATGCTGCCGCTGGTGATTTTACTTTCGTCCTTAGGCGGAGCAGTTGTCGGCATCAC
TATGATTGTCAGTAAACGCCTCAAGCAAGGTAATCCCATCCCATTTGGGCCTTATATTGCTGCCGCAGGCTGGATAGCCT
TGCTATTTGGACAACAGATTGTTGATTGGTATTTAGGAACTCTATAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-147)

• Type IV leader peptidase family (Peptidase_A24) (158-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.864	95.779	0.497
pilD	Vibrio campbellii strain DS40M4	49.664	96.753	0.481
pilD	Acinetobacter baumannii D1279779	49.481	93.831	0.464
pilD	Acinetobacter nosocomialis M2	49.481	93.831	0.464
pilD	Neisseria gonorrhoeae MS11	44.138	94.156	0.416