NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB8O64_RS12720	Genome accession	NZ_CP166299
Coordinates	2828787..2829455 (-)	Length	222 a.a.
NCBI ID	WP_130877735.1	Uniprot ID	-
Organism	Streptomyces sp. QH1-20
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2823787..2834455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB8O64_RS12700 (AB8O64_12710)	-	2824643..2825569 (+)	927	WP_370419278.1	hypothetical protein	-
AB8O64_RS12705 (AB8O64_12715)	-	2825687..2826670 (+)	984	WP_370419279.1	hypothetical protein	-
AB8O64_RS12710 (AB8O64_12720)	-	2826883..2827278 (+)	396	WP_370419280.1	hypothetical protein	-
AB8O64_RS12715 (AB8O64_12725)	clpX	2827348..2828634 (-)	1287	WP_365370604.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB8O64_RS12720 (AB8O64_12730)	clpP	2828787..2829455 (-)	669	WP_130877735.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB8O64_RS12725 (AB8O64_12735)	clpP	2829512..2830129 (-)	618	WP_370419281.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB8O64_RS12730 (AB8O64_12740)	tig	2830420..2831802 (-)	1383	WP_356456837.1	trigger factor	-
AB8O64_RS12745 (AB8O64_12755)	-	2832591..2832764 (-)	174	WP_362213498.1	hypothetical protein	-
AB8O64_RS12750 (AB8O64_12760)	-	2833048..2834187 (+)	1140	WP_370419282.1	acyltransferase family protein	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 24462.89 Da Isoelectric Point: 4.6898

                                >NTDB_id=928155 AB8O64_RS12720 WP_130877735.1 2828787..2829455(-) (clpP) [Streptomyces sp. QH1-20]

MVNTRMNNFPGSGLYTGPQAEARYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQVDDASANDVMAQLLCLESMDPDR

DISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPSSQTGREQLSDLE

IAANEIMRMRTQLEEMLAKHSSTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKTSVSV

Nucleotide

Download Length: 669 bp

                                >NTDB_id=928155 AB8O64_RS12720 WP_130877735.1 2828787..2829455(-) (clpP) [Streptomyces sp. QH1-20]

ATGGTGAACACCCGCATGAACAACTTCCCCGGCAGCGGCCTCTACACCGGCCCGCAGGCCGAAGCCCGCTACGTCGTGCC

GCGCTTCGTGGAGCGCACCTCCCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCC

TGGGCGTCCAGGTCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCCGACCGT

GACATCTCGATCTACATCAACTCGCCGGGCGGCTCGTTCACCGCGCTGACCGCGATCTACGACACGATGCAGTTCGTGAA

GCCCGACATCCAGACCGTCTGCATGGGCCAGGCCGCCTCCGCGGCCGCGATCCTGCTGGCCGCCGGTACCCCCGGCAAGC

GGATGGCCCTGCCGAACGCCCGCGTCCTGATCCACCAGCCGTCCAGCCAGACGGGCCGTGAGCAGCTCTCCGACCTGGAG

ATCGCGGCGAACGAGATCATGCGCATGCGTACGCAGCTCGAGGAGATGCTGGCGAAGCACTCCAGCACGCCGATCGAGAA

GATCCGTGACGACATCGAGCGCGACAAGATCCTCACTGCCGAGGACGCGCTCGCGTACGGTCTGGTCGACCAGATCGTTT

CGACGCGTAAGACGTCTGTTTCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	49.474	85.586	0.423
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	47.34	84.685	0.401
clpP	Streptococcus mutans UA159	45.361	87.387	0.396
clpP	Streptococcus pyogenes MGAS315	44.33	87.387	0.387
clpP	Streptococcus thermophilus LMD-9	44.33	87.387	0.387
clpP	Streptococcus thermophilus LMG 18311	44.33	87.387	0.387
clpP	Streptococcus pyogenes JRS4	44.33	87.387	0.387
clpP	Lactococcus lactis subsp. cremoris KW2	45.026	86.036	0.387
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.503	86.036	0.383
clpP	Streptococcus pneumoniae Rx1	43.523	86.937	0.378
clpP	Streptococcus pneumoniae D39	43.523	86.937	0.378
clpP	Streptococcus pneumoniae R6	43.523	86.937	0.378
clpP	Streptococcus pneumoniae TIGR4	43.523	86.937	0.378

Detailed information NTG0928155