NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB5J89_RS15000	Genome accession	NZ_CP163523
Coordinates	3339377..3339979 (-)	Length	200 a.a.
NCBI ID	WP_221909351.1	Uniprot ID	-
Organism	Streptomyces sp. cg2
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 3334377..3344979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J89_RS14985 (AB5J89_14985)	-	3336141..3337103 (+)	963	WP_221904709.1	hypothetical protein	-
AB5J89_RS14990 (AB5J89_14990)	clpX	3337193..3338476 (-)	1284	WP_221904710.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J89_RS14995 (AB5J89_14995)	clpP	3338638..3339312 (-)	675	WP_313904738.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J89_RS15000 (AB5J89_15000)	clpP	3339377..3339979 (-)	603	WP_221909351.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J89_RS15005 (AB5J89_15005)	tig	3340282..3341679 (-)	1398	WP_221904711.1	trigger factor	-
AB5J89_RS15020 (AB5J89_15020)	-	3342441..3342950 (+)	510	WP_369356731.1	FkbM family methyltransferase	-
AB5J89_RS15025 (AB5J89_15025)	-	3343039..3343419 (+)	381	WP_352296187.1	arsenate reductase family protein	-
AB5J89_RS15030 (AB5J89_15030)	-	3343517..3343711 (-)	195	WP_026247383.1	hypothetical protein	-

Sequence

Protein

Download Length: 200 a.a. Molecular weight: 21129.99 Da Isoelectric Point: 4.9745

                                >NTDB_id=926513 AB5J89_RS15000 WP_221909351.1 3339377..3339979(-) (clpP) [Streptomyces sp. cg2]

MPSAAAEPTIGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSVPAGMAIYDTMQYI

KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHADQLLRTKKRLGELSAHHTGQTLEQ

WTKDADRDRWFSAEEAKAYGIIDEVMHSAASVPGGGGTGA

Nucleotide

Download Length: 603 bp

                                >NTDB_id=926513 AB5J89_RS15000 WP_221909351.1 3339377..3339979(-) (clpP) [Streptomyces sp. cg2]

ATGCCTTCCGCCGCCGCTGAGCCGACCATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTGGCCGCTGACCCCGACA

AGGACATCTACCTCTACATCAACTCCCCCGGCGGCTCGGTCCCGGCCGGCATGGCGATCTACGACACCATGCAGTACATC

AAGAACGACGTGGTCACCATCGCCATGGGCCTCGCCGCCTCGATGGGCCAGTTCCTGCTGAGCGCCGGCACGCCGGGCAA

GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGCCTGGCGGGCTCGGCCTCGGACATCAAGA

TCCACGCCGACCAGCTGCTCCGCACGAAGAAGCGCCTGGGCGAGCTCTCCGCGCACCACACCGGCCAGACCCTGGAGCAG

TGGACCAAGGACGCCGACCGCGACCGCTGGTTCAGCGCCGAGGAGGCCAAGGCGTACGGCATCATCGACGAGGTCATGCA

CTCCGCCGCCAGTGTCCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Lactococcus lactis subsp. cremoris KW2	53.403	95.5	0.51
clpP	Streptococcus mutans UA159	52.88	95.5	0.505
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.88	95.5	0.505
clpP	Bacillus subtilis subsp. subtilis str. 168	53.476	93.5	0.5
clpP	Streptococcus pyogenes MGAS315	52.356	95.5	0.5
clpP	Streptococcus pyogenes JRS4	52.356	95.5	0.5
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.579	95	0.49
clpP	Streptococcus thermophilus LMG 18311	50.794	94.5	0.48
clpP	Streptococcus thermophilus LMD-9	50.794	94.5	0.48
clpP	Streptococcus pneumoniae Rx1	50.265	94.5	0.475
clpP	Streptococcus pneumoniae D39	50.265	94.5	0.475
clpP	Streptococcus pneumoniae R6	50.265	94.5	0.475
clpP	Streptococcus pneumoniae TIGR4	50.265	94.5	0.475

Detailed information NTG0926513