Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J89_RS14995 Genome accession   NZ_CP163523
Coordinates   3338638..3339312 (-) Length   224 a.a.
NCBI ID   WP_313904738.1    Uniprot ID   -
Organism   Streptomyces sp. cg2     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3333638..3344312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J89_RS14985 (AB5J89_14985) - 3336141..3337103 (+) 963 WP_221904709.1 hypothetical protein -
  AB5J89_RS14990 (AB5J89_14990) clpX 3337193..3338476 (-) 1284 WP_221904710.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J89_RS14995 (AB5J89_14995) clpP 3338638..3339312 (-) 675 WP_313904738.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J89_RS15000 (AB5J89_15000) clpP 3339377..3339979 (-) 603 WP_221909351.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J89_RS15005 (AB5J89_15005) tig 3340282..3341679 (-) 1398 WP_221904711.1 trigger factor -
  AB5J89_RS15020 (AB5J89_15020) - 3342441..3342950 (+) 510 WP_369356731.1 FkbM family methyltransferase -
  AB5J89_RS15025 (AB5J89_15025) - 3343039..3343419 (+) 381 WP_352296187.1 arsenate reductase family protein -
  AB5J89_RS15030 (AB5J89_15030) - 3343517..3343711 (-) 195 WP_026247383.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24833.24 Da        Isoelectric Point: 4.7428

>NTDB_id=926512 AB5J89_RS14995 WP_313904738.1 3338638..3339312(-) (clpP) [Streptomyces sp. cg2]
MNNYPGSGLYERTKAEFSGMTAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPFSETGRGQVSD
LEIAAREIQRMRQQLEEMLAKHSSTPIEKIREDIERDKILTAEESLAYGLVDQIVSTRKTSVSV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=926512 AB5J89_RS14995 WP_313904738.1 3338638..3339312(-) (clpP) [Streptomyces sp. cg2]
ATGAACAACTACCCCGGAAGCGGCCTTTACGAGCGCACGAAGGCCGAGTTCTCCGGCATGACCGCCGAGTCCCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGGGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCCCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGGTCTACATCAACAGCCCCGGTGGTTCCTTCACCGCGCTGACGGCGATCTACGACACCATGCAGTT
CGTCAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCGGCGGCCGTGCTGCTGGCGGCCGGCACCCCGG
GCAAGCGCATGGCGCTGCCCAACGCCCGGGTCCTGATCCACCAGCCGTTCAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCCGCGAGATCCAGCGGATGCGCCAGCAGCTGGAGGAGATGCTGGCCAAGCACTCGTCCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGTGACAAGATCCTCACCGCCGAGGAGTCGCTGGCGTACGGTCTGGTCGACCAGA
TCGTCTCGACGCGGAAGACCTCCGTCTCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

84.821

0.429
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

83.929

0.402
  clpP Streptococcus mutans UA159

44.444

88.393

0.393
  clpP Streptococcus thermophilus LMG 18311

44.845

86.607

0.388
  clpP Streptococcus thermophilus LMD-9

44.845

86.607

0.388
  clpP Streptococcus pyogenes JRS4

44.845

86.607

0.388
  clpP Streptococcus pyogenes MGAS315

44.845

86.607

0.388
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

85.268

0.384
  clpP Streptococcus pneumoniae Rx1

44.041

86.161

0.379
  clpP Streptococcus pneumoniae D39

44.041

86.161

0.379
  clpP Streptococcus pneumoniae R6

44.041

86.161

0.379
  clpP Streptococcus pneumoniae TIGR4

44.041

86.161

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

85.268

0.375