Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J87_RS23340 Genome accession   NZ_CP163520
Coordinates   5275646..5276263 (+) Length   205 a.a.
NCBI ID   WP_369378996.1    Uniprot ID   -
Organism   Streptomyces sp. cg36     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5270646..5281263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J87_RS23315 (AB5J87_23315) - 5272601..5273059 (+) 459 WP_369378992.1 HD domain-containing protein -
  AB5J87_RS23320 (AB5J87_23320) - 5273187..5273381 (+) 195 WP_369378993.1 hypothetical protein -
  AB5J87_RS23335 (AB5J87_23335) tig 5273955..5275334 (+) 1380 WP_369378995.1 trigger factor -
  AB5J87_RS23340 (AB5J87_23340) clpP 5275646..5276263 (+) 618 WP_369378996.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J87_RS23345 (AB5J87_23345) clpP 5276341..5277018 (+) 678 WP_369378998.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J87_RS23350 (AB5J87_23350) clpX 5277163..5278455 (+) 1293 WP_067158960.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AB5J87_RS23355 (AB5J87_23355) - 5278585..5279532 (-) 948 WP_369379000.1 hypothetical protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21819.77 Da        Isoelectric Point: 4.5818

>NTDB_id=926461 AB5J87_RS23340 WP_369378996.1 5275646..5276263(+) (clpP) [Streptomyces sp. cg36]
MTNLMPYAAGEPSLGGGLGDHVYNRLLNERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAIYD
TMQYIPNDVVTIGMGMAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGIGGTASDIKIQAEYLLRTKTRMAEITAHHSG
QSVETIIRDGDRDRWYTAEEAKEYGLIDEIMAHAALVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=926461 AB5J87_RS23340 WP_369378996.1 5275646..5276263(+) (clpP) [Streptomyces sp. cg36]
GTGACGAATCTGATGCCTTATGCCGCCGGCGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CAACGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTCCTCCTCCTGG
CCGCCGAGCCGGAGAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGATCTACGAC
ACCATGCAGTACATCCCGAACGACGTGGTCACGATCGGTATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCACCGG
CGGCACCGCCGGCAAGCGCTTCGCGCTGCCCAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG
CCTCGGACATCAAGATCCAGGCCGAGTACCTGCTGCGCACGAAGACGCGCATGGCGGAGATCACCGCCCACCACTCCGGC
CAGTCCGTCGAGACGATCATCCGCGACGGCGACCGCGACCGGTGGTACACGGCGGAGGAGGCCAAGGAGTACGGCCTCAT
CGACGAGATCATGGCCCACGCGGCGCTCGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.646

93.659

0.502
  clpP Lactococcus lactis subsp. cremoris KW2

51.531

95.61

0.493
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.083

93.659

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.02

95.61

0.488
  clpP Streptococcus pneumoniae TIGR4

49.49

95.61

0.473
  clpP Streptococcus pneumoniae Rx1

49.49

95.61

0.473
  clpP Streptococcus pneumoniae D39

49.49

95.61

0.473
  clpP Streptococcus pneumoniae R6

49.49

95.61

0.473
  clpP Streptococcus thermophilus LMG 18311

48.98

95.61

0.468
  clpP Streptococcus thermophilus LMD-9

48.98

95.61

0.468
  clpP Streptococcus mutans UA159

48.731

96.098

0.468
  clpP Streptococcus pyogenes JRS4

48.469

95.61

0.463
  clpP Streptococcus pyogenes MGAS315

48.469

95.61

0.463