Detailed information NTG0926463

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB5J87_RS23350
• Genome accession: NZ_CP163520
• Coordinates: 5277163..5278455 (+)
• Length: 430 a.a.
• NCBI ID: WP_067158960.1
• Uniprot ID: A0ABZ1XID2
• Organism: Streptomyces sp. cg36
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5272163..5283455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J87_RS23315 (AB5J87_23315)	-	5272601..5273059 (+)	459	WP_369378992.1	HD domain-containing protein	-
AB5J87_RS23320 (AB5J87_23320)	-	5273187..5273381 (+)	195	WP_369378993.1	hypothetical protein	-
AB5J87_RS23335 (AB5J87_23335)	tig	5273955..5275334 (+)	1380	WP_369378995.1	trigger factor	-
AB5J87_RS23340 (AB5J87_23340)	clpP	5275646..5276263 (+)	618	WP_369378996.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J87_RS23345 (AB5J87_23345)	clpP	5276341..5277018 (+)	678	WP_369378998.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J87_RS23350 (AB5J87_23350)	clpX	5277163..5278455 (+)	1293	WP_067158960.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J87_RS23355 (AB5J87_23355)	-	5278585..5279532 (-)	948	WP_369379000.1	hypothetical protein	-
AB5J87_RS23360 (AB5J87_23360)	-	5279672..5282296 (+)	2625	WP_369379002.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 430 a.a.
• Molecular weight: 47142.01 Da
• Isoelectric Point: 4.8809

>NTDB_id=926463 AB5J87_RS23350 WP_067158960.1 5277163..5278455(+) (clpX) [Streptomyces sp. cg36]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKREIEASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVHNNVNPTLVPREPRIVKNDGRHEKSA

Nucleotide

• Length: 1293 bp

>NTDB_id=926463 AB5J87_RS23350 WP_067158960.1 5277163..5278455(+) (clpX) [Streptomyces sp. cg36]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGGAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGTCCT
CCGAGGTGCGGTGGGAGGAACTGCCCAAGCCGCGCGAGATCTACGAGTTCCTGGAGAGCTACGTGGTGGGCCAGGAGCCC
GCCAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGGGAGAACGGCGGGGCGCAGGGCCG
CGACGACGCGATCGAGCTCGCCAAGTCCAACATCCTGCTGCTCGGGCCCACGGGCTCCGGCAAGACGCTCCTGGCCCAGA
CGCTGGCCCGGATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTCACGGAGGCGGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGGAAGAGCGAAAACCCGTCGATCACGCGCGACGTCTCCGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACGGCCTCCGTTCCGCCGCAGGGCGGGCGCAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGTGCCTTCGCGGGCCTGGAGAAGATCATCGAGTCGCGGGCGGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGGGAGATCGAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGGCTGCCCGTCCTCACCTCGGTCCACAACCTCGACCGC
GAGGCGCTCCTGCAGATCCTCGTCGAGCCGCGCAACGCACTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGACCGCCCGGCCCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCGGCACCGGCGCGCGCGGACTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACC
TCCGACGTCGTCCACAACAACGTCAACCCGACGCTGGTCCCGCGCGAGCCGCGGATCGTGAAGAACGACGGACGCCACGA
GAAGTCCGCGTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.93	93.488	0.598
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.398	95.814	0.512