Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VKP36_RS08510 Genome accession   NZ_CP142357
Coordinates   1713997..1715268 (-) Length   423 a.a.
NCBI ID   WP_032465305.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain AW-534     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1708997..1720268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP36_RS08485 (VKP36_08485) - 1710966..1711271 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  VKP36_RS08490 (VKP36_08490) ruvX 1711283..1711702 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  VKP36_RS08495 (VKP36_08495) - 1711699..1711968 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  VKP36_RS08500 (VKP36_08500) spx 1712083..1712481 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  VKP36_RS08505 (VKP36_08505) recA 1712772..1713908 (-) 1137 WP_023612663.1 recombinase RecA Machinery gene
  VKP36_RS08510 (VKP36_08510) cinA 1713997..1715268 (-) 1272 WP_032465305.1 competence/damage-inducible protein A Machinery gene
  VKP36_RS08515 (VKP36_08515) - 1715337..1715897 (-) 561 WP_010922755.1 DNA-3-methyladenine glycosylase I -
  VKP36_RS08520 (VKP36_08520) ruvA 1715907..1716503 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA -
  VKP36_RS08525 (VKP36_08525) - 1716505..1717725 (-) 1221 WP_014407934.1 MDR family MFS transporter -
  VKP36_RS08530 (VKP36_08530) mutL 1717736..1719718 (-) 1983 WP_010922757.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46031.79 Da        Isoelectric Point: 4.8322

>NTDB_id=925399 VKP36_RS08510 WP_032465305.1 1713997..1715268(-) (cinA) [Streptococcus pyogenes strain AW-534]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVITTASQRSDLVILCGGLGPTKDDLTKQT
LAKYLRKDLVYDEQACQKLDDFFAKRKPSSRTPNNERQAQVIEGSIPLPNKTGLAVGGFITVDGIRYVVLPGPPSELKPM
VNEELVPLLSKQYSTLYSKVLRFFGIGESQLVTVLSDFIENQTDPTIAPYAKTGEVTLRLSTKTENQALADKKLGQLEAQ
LLSQKTLEGQPLADVFYGYGEDNSLARETFELLVKYDKTITAAESLTAGLFQSTLASFPGASQVFNGGFVTYSMEEKAKM
LGLPLEELKSHGVVSAYTAEGMAEQARLLTGADIGVSLTGVAGPDMLEEQPAGTVFIGLATQNKVESIKVLISGRSRLDV
RYIATLHAFNMVRKTLLKLENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=925399 VKP36_RS08510 WP_032465305.1 1713997..1715268(-) (cinA) [Streptococcus pyogenes strain AW-534]
ATGAAAGCTGAACTGATTGCAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGACAACGAGGAGCGTTTACTTTCAGTGATTA
CAACTGCTAGTCAGCGTAGTGACTTGGTAATTTTATGTGGTGGCCTTGGTCCAACGAAAGATGATTTAACCAAACAAACT
TTAGCAAAGTACCTTAGGAAAGACTTGGTTTATGATGAGCAAGCTTGTCAGAAACTAGATGACTTTTTTGCTAAGCGCAA
GCCTTCATCACGGACACCAAATAATGAGCGACAGGCACAAGTGATTGAAGGGTCAATCCCTTTGCCAAATAAAACTGGTC
TTGCGGTTGGTGGGTTCATCACAGTCGATGGTATTAGATATGTTGTCTTACCGGGTCCTCCAAGTGAATTGAAGCCGATG
GTAAATGAAGAATTGGTACCACTTCTGTCAAAACAATACAGTACATTGTATTCAAAGGTACTACGCTTTTTTGGTATTGG
GGAAAGTCAGTTGGTAACAGTCTTGTCAGATTTTATTGAGAATCAAACTGATCCAACCATTGCTCCGTATGCTAAGACTG
GCGAAGTGACTCTTCGCTTATCAACAAAAACTGAAAACCAAGCTCTGGCAGATAAAAAGTTAGGTCAGCTAGAAGCGCAG
CTACTATCCCAAAAAACTCTTGAAGGTCAACCCTTAGCAGATGTCTTTTATGGCTATGGGGAGGATAATTCCTTAGCGCG
TGAGACATTTGAGCTCTTAGTAAAATATGATAAGACAATTACAGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTCCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCGAAAATG
CTAGGCCTTCCTTTAGAGGAGTTGAAATCGCATGGCGTTGTTAGTGCTTATACGGCCGAGGGGATGGCGGAGCAAGCAAG
GTTATTGACTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCCGGACCAGATATGTTGGAGGAACAGCCTGCAGGTA
CAGTTTTCATTGGTCTTGCCACTCAAAATAAGGTAGAATCAATAAAGGTTTTGATTAGCGGGCGAAGTCGTTTGGATGTG
CGCTATATCGCTACTTTACATGCCTTTAATATGGTTCGTAAAACTTTATTAAAACTTGAGAATTTGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(263-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

69.74

100

0.697
  cinA Streptococcus mitis SK321

69.784

98.582

0.688
  cinA Streptococcus mitis NCTC 12261

69.305

98.582

0.683
  cinA Streptococcus pneumoniae TIGR4

68.585

98.582

0.676
  cinA Streptococcus pneumoniae Rx1

68.585

98.582

0.676
  cinA Streptococcus pneumoniae R6

68.585

98.582

0.676
  cinA Streptococcus pneumoniae D39

68.345

98.582

0.674
  cinA Streptococcus suis isolate S10

53.125

98.345

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

46.411

98.818

0.459