Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   VKP53_RS00780 Genome accession   NZ_CP142354
Coordinates   117775..118809 (+) Length   344 a.a.
NCBI ID   WP_231871599.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6745-99     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112775..123809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP53_RS00770 (VKP53_00770) - 116458..116823 (+) 366 WP_002986560.1 DUF1033 family protein -
  VKP53_RS00775 (VKP53_00775) comYA 116916..117839 (+) 924 WP_136281985.1 competence type IV pilus ATPase ComGA Machinery gene
  VKP53_RS00780 (VKP53_00780) comYB 117775..118809 (+) 1035 WP_231871599.1 competence type IV pilus assembly protein ComGB Machinery gene
  VKP53_RS00785 (VKP53_00785) comYC 118811..119137 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  VKP53_RS00790 (VKP53_00790) comGD 119112..119540 (+) 429 WP_023605232.1 competence type IV pilus minor pilin ComGD -
  VKP53_RS00795 (VKP53_00795) comGE 119497..119781 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  VKP53_RS00800 (VKP53_00800) comYF 119774..120208 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  VKP53_RS00805 (VKP53_00805) comGG 120192..120518 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  VKP53_RS00810 (VKP53_00810) comYH 120616..121569 (+) 954 WP_326674822.1 class I SAM-dependent methyltransferase Machinery gene
  VKP53_RS00815 (VKP53_00815) - 121628..122824 (+) 1197 WP_030126459.1 acetate kinase -
  VKP53_RS00820 (VKP53_00820) - 123010..123318 (+) 309 Protein_115 hypothetical protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39690.18 Da        Isoelectric Point: 9.7085

>NTDB_id=925193 VKP53_RS00780 WP_231871599.1 117775..118809(+) (comYB) [Streptococcus pyogenes strain 6745-99]
MISFLRQDISIPSKLSLKKLSSKHQHKFIQLLANLLSTGFSFAEVIAFLKRSQLLQLDYVLKMEESLLKGQGLADMLSGL
GFSDAILTQISLADRHGNIETTLVAIQHYLNQMARIRRKTVEVITYPLILLLFLFVMMLGLRRYLIPQLETQNQITYFLN
HFPAFFIGFCSGLILLFGMVWLRWRSQSRLKLYSRLSRYPFLGKLLKQYLTSYYAREWGTLIGQGLDLMTILDIMAIEKS
SLMKELAEDIRMSLLEGQAFHIKVATYPFFKKELSLMIEYGEIKSKLGAELEIYAQESWEQFFSQLYQVTQLIQPAIFLV
VAVTIVMIYAAILLPIYQNMGGIF

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=925193 VKP53_RS00780 WP_231871599.1 117775..118809(+) (comYB) [Streptococcus pyogenes strain 6745-99]
TTGATCAGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAGTAAACATCAGCATAA
ATTCATTCAATTACTAGCTAATCTTTTATCTACAGGATTTAGCTTCGCAGAGGTTATTGCTTTTTTAAAAAGAAGCCAGT
TGCTTCAGCTAGATTATGTTCTTAAAATGGAAGAATCTTTATTAAAAGGACAAGGCTTAGCAGATATGTTGTCGGGTTTA
GGTTTTTCAGATGCTATTCTTACTCAAATTAGTTTAGCTGATAGACACGGTAATATTGAAACAACATTAGTAGCGATTCA
ACATTACTTGAACCAAATGGCAAGGATCAGACGAAAAACTGTTGAAGTTATCACCTATCCTCTTATTCTTTTACTTTTTC
TTTTTGTGATGATGCTAGGGTTGAGACGCTATTTAATCCCTCAATTAGAAACTCAAAATCAGATAACTTACTTTCTTAAC
CATTTTCCTGCCTTCTTTATAGGTTTTTGCTCGGGTCTTATTTTGTTGTTCGGGATGGTATGGCTACGATGGCGATCTCA
AAGCCGCTTGAAACTTTATAGTCGGCTAAGCCGTTATCCTTTTTTAGGTAAACTGTTAAAACAATACTTAACTAGTTATT
ATGCTAGAGAATGGGGTACGTTAATAGGTCAAGGTCTTGATTTGATGACTATTTTAGACATTATGGCCATTGAGAAATCC
TCACTAATGAAAGAATTAGCTGAGGACATCAGAATGAGTCTGCTTGAAGGGCAAGCCTTTCACATTAAAGTAGCTACCTA
CCCTTTTTTTAAAAAAGAATTAAGTTTAATGATTGAATACGGTGAAATCAAATCGAAACTGGGGGCTGAGTTGGAAATCT
ATGCCCAGGAAAGCTGGGAACAATTTTTTAGTCAGCTTTATCAAGTGACACAACTTATTCAACCAGCTATTTTTTTAGTA
GTTGCTGTGACAATCGTCATGATTTATGCGGCAATCCTATTACCAATTTACCAAAATATGGGAGGTATTTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-335)

Type II secretion system (T2SS), protein F (T2SSF)

(28-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.982

98.547

0.532
  comYB Streptococcus mutans UA159

53.982

98.547

0.532
  comYB Streptococcus gordonii str. Challis substr. CH1

50.588

98.837

0.5
  comGB/cglB Streptococcus mitis NCTC 12261

47.619

97.674

0.465
  comGB/cglB Streptococcus mitis SK321

47.748

96.802

0.462
  comGB/cglB Streptococcus pneumoniae Rx1

45.646

96.802

0.442
  comGB/cglB Streptococcus pneumoniae D39

45.646

96.802

0.442
  comGB/cglB Streptococcus pneumoniae R6

45.646

96.802

0.442
  comGB/cglB Streptococcus pneumoniae TIGR4

45.646

96.802

0.442
  comGB Lactococcus lactis subsp. cremoris KW2

42.769

94.477

0.404