NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AB5J48_RS10820	Genome accession	NZ_CP163433
Coordinates	2471510..2472217 (-)	Length	235 a.a.
NCBI ID	WP_006133588.1	Uniprot ID	M3DCF9
Organism	Streptomyces sp. R17
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2466510..2477217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J48_RS10805 (AB5J48_10805)	-	2467982..2468998 (+)	1017	WP_189406147.1	hypothetical protein	-
AB5J48_RS10810 (AB5J48_10810)	-	2469036..2469974 (+)	939	WP_369150410.1	hypothetical protein	-
AB5J48_RS10815 (AB5J48_10815)	clpX	2470041..2471327 (-)	1287	WP_006133586.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB5J48_RS10820 (AB5J48_10820)	clpP	2471510..2472217 (-)	708	WP_006133588.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J48_RS10825 (AB5J48_10825)	-	2472328..2472933 (-)	606	WP_006133589.1	ATP-dependent Clp protease proteolytic subunit	-
AB5J48_RS10830 (AB5J48_10830)	tig	2473235..2474629 (-)	1395	WP_189406149.1	trigger factor	-
AB5J48_RS10845 (AB5J48_10845)	-	2475184..2475378 (-)	195	WP_006133597.1	hypothetical protein	-
AB5J48_RS10850 (AB5J48_10850)	-	2476027..2477214 (+)	1188	WP_369150415.1	acyltransferase family protein	-

Sequence

Protein

Download Length: 235 a.a. Molecular weight: 26175.75 Da Isoelectric Point: 4.6619

                                >NTDB_id=925084 AB5J48_RS10820 WP_006133588.1 2471510..2472217(-) (clpP) [Streptomyces sp. R17]

MNAFPGSGIYDRMQAVQDMTGSQGRYTGPQAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQ

LLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYS

ETGRGQVSDLEIAANEILRMRTQLEEMLAKHSTRPIEKIREDIERDKILTAEDALEYGLIDQIITTRKMDNSSLR

Nucleotide

Download Length: 708 bp

                                >NTDB_id=925084 AB5J48_RS10820 WP_006133588.1 2471510..2472217(-) (clpP) [Streptomyces sp. R17]

GTGAACGCATTCCCCGGCAGCGGGATCTACGACCGTATGCAGGCCGTGCAGGACATGACCGGCTCGCAGGGCCGCTACAC

CGGTCCGCAGGCCGAGTCCCGTTACGTCATCCCGCGCTTCGTCGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGT

ACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAG

CTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCT

CACCGCGATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACGGTGTGCATGGGCCAGGCGGCCTCCGCCGCCG

CCGTCCTGCTCGCCGCCGGCACGCCCGGCAAGCGCATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCGTACAGC

GAGACCGGCCGCGGTCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTCCGCATGCGTACGCAGCTGGAGGAGAT

GCTGGCCAAGCACTCCACCCGTCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACG

CGCTGGAGTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCAGCCTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(46-226)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	M3DCF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.632	80.851	0.426
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.064	80	0.409
clpP	Lactococcus lactis subsp. cremoris KW2	45.05	85.957	0.387
clpP	Streptococcus mutans UA159	44.39	87.234	0.387
clpP	Streptococcus thermophilus LMD-9	46.154	82.979	0.383
clpP	Streptococcus thermophilus LMG 18311	46.154	82.979	0.383
clpP	Streptococcus pyogenes JRS4	44.776	85.532	0.383
clpP	Streptococcus pyogenes MGAS315	44.776	85.532	0.383
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.059	85.957	0.379
clpP	Streptococcus pneumoniae Rx1	44.388	83.404	0.37
clpP	Streptococcus pneumoniae TIGR4	44.388	83.404	0.37
clpP	Streptococcus pneumoniae D39	44.388	83.404	0.37
clpP	Streptococcus pneumoniae R6	44.388	83.404	0.37

Detailed information NTG0925084