Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB5J55_RS02725 Genome accession   NZ_CP163432
Coordinates   581607..582245 (+) Length   212 a.a.
NCBI ID   WP_369269083.1    Uniprot ID   -
Organism   Streptomyces sp. R11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 576607..587245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J55_RS02705 (AB5J55_02705) - 577714..578592 (+) 879 WP_369269079.1 geranyl diphosphate 2-C-methyltransferase -
  AB5J55_RS02710 (AB5J55_02710) - 578711..579670 (+) 960 WP_369269080.1 SGNH/GDSL hydrolase family protein -
  AB5J55_RS02715 (AB5J55_02715) - 579687..580166 (-) 480 WP_369269081.1 VOC family protein -
  AB5J55_RS02720 (AB5J55_02720) - 580291..581496 (+) 1206 WP_369269082.1 epoxide hydrolase family protein -
  AB5J55_RS02725 (AB5J55_02725) clpP 581607..582245 (+) 639 WP_369269083.1 ATP-dependent Clp protease proteolytic subunit Regulator
  AB5J55_RS02730 (AB5J55_02730) clpP 582247..582849 (+) 603 WP_369269084.1 ClpP family protease Regulator
  AB5J55_RS02735 (AB5J55_02735) - 582865..583314 (-) 450 WP_369269085.1 helix-turn-helix domain-containing protein -
  AB5J55_RS02740 (AB5J55_02740) - 583414..583869 (-) 456 WP_369269086.1 ATP-binding protein -
  AB5J55_RS02745 (AB5J55_02745) - 583969..585117 (-) 1149 WP_369269087.1 DUF6777 domain-containing protein -
  AB5J55_RS02750 (AB5J55_02750) - 585288..586574 (+) 1287 WP_369269088.1 streptophobe family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 22945.96 Da        Isoelectric Point: 4.6735

>NTDB_id=924985 AB5J55_RS02725 WP_369269083.1 581607..582245(+) (clpP) [Streptomyces sp. R11]
MTPLTTLAPRAEEGDTAPTRFDDQLAAQLLGQRIVLLGTQVDEVSANRVCAQLLILSAEDPRTDISLYINSPGGSVHAGL
AIYDTMRLIPNDVATLAMGFAASMGQFLLSVGSAGKRYALPNARIMMHQPSAGIGGTTADIEIQAENLEFTKRTIERITA
EHTGQTPETISRDGDRDRWFTAEEAREYGMVDQVVESLADVRPAASKRRMGL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=924985 AB5J55_RS02725 WP_369269083.1 581607..582245(+) (clpP) [Streptomyces sp. R11]
ATGACTCCACTCACCACGCTCGCGCCGCGGGCAGAGGAGGGTGACACCGCGCCCACCCGCTTCGACGACCAGCTGGCCGC
CCAGCTCCTCGGCCAGCGCATCGTCCTGCTGGGCACCCAGGTCGACGAGGTCTCCGCGAACCGGGTCTGCGCGCAACTGC
TGATCCTGTCCGCGGAGGACCCGCGCACCGACATCAGCCTGTACATCAACAGCCCGGGCGGCTCGGTGCACGCGGGTCTG
GCCATCTACGACACGATGCGGCTGATCCCGAACGACGTCGCGACACTCGCCATGGGCTTCGCGGCCAGCATGGGCCAGTT
CCTGCTGAGCGTGGGCAGCGCGGGCAAGCGCTACGCGCTGCCGAACGCGCGGATCATGATGCACCAGCCGTCGGCGGGCA
TCGGCGGCACCACCGCGGACATCGAGATCCAGGCGGAGAACCTGGAGTTCACGAAGAGGACCATCGAGCGGATCACCGCC
GAGCACACCGGCCAGACCCCGGAGACCATCTCCCGGGACGGTGACCGCGACCGCTGGTTCACGGCCGAGGAGGCCAGGGA
GTACGGCATGGTGGACCAGGTCGTGGAGTCCCTCGCGGATGTCCGCCCGGCCGCCTCCAAGCGACGGATGGGGCTGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(25-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.438

83.962

0.415
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.133

81.604

0.401
  clpP Streptococcus pneumoniae D39

48.555

81.604

0.396
  clpP Streptococcus pneumoniae TIGR4

48.555

81.604

0.396
  clpP Streptococcus pneumoniae R6

48.555

81.604

0.396
  clpP Streptococcus pneumoniae Rx1

48.555

81.604

0.396
  clpP Streptococcus pyogenes JRS4

47.429

82.547

0.392
  clpP Streptococcus pyogenes MGAS315

47.429

82.547

0.392
  clpP Lactococcus lactis subsp. cremoris KW2

46.286

82.547

0.382
  clpP Streptococcus mutans UA159

46.286

82.547

0.382
  clpP Streptococcus thermophilus LMG 18311

46.243

81.604

0.377
  clpP Streptococcus thermophilus LMD-9

46.243

81.604

0.377
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.714

82.547

0.377