Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VKP56_RS01410 Genome accession   NZ_CP142350
Coordinates   265279..265830 (+) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1445     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 260279..270830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS01410 (VKP56_01410) comX/sigX/comX2/sigX2 265279..265830 (+) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator
  VKP56_RS01415 (VKP56_01415) - 266389..266916 (+) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  VKP56_RS01420 (VKP56_01420) yqeH 266916..268034 (+) 1119 WP_015016688.1 ribosome biogenesis GTPase YqeH -
  VKP56_RS01425 (VKP56_01425) yhbY 268059..268367 (+) 309 WP_326657232.1 ribosome assembly RNA-binding protein YhbY -
  VKP56_RS01430 (VKP56_01430) - 268436..269068 (+) 633 WP_030126155.1 nicotinate-nucleotide adenylyltransferase -
  VKP56_RS01435 (VKP56_01435) yqeK 269065..269658 (+) 594 WP_002985989.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  VKP56_RS01440 (VKP56_01440) rsfS 269682..270035 (+) 354 WP_011017339.1 ribosome silencing factor -
  VKP56_RS01445 (VKP56_01445) - 270083..270826 (+) 744 WP_002991831.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=924986 VKP56_RS01410 WP_010921894.1 265279..265830(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain SS1445]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=924986 VKP56_RS01410 WP_010921894.1 265279..265830(+) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain SS1445]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.