Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | OCV12_RS04385 | Genome accession | NZ_AP025506 |
| Coordinates | 987784..988083 (+) | Length | 99 a.a. |
| NCBI ID | WP_261885430.1 | Uniprot ID | - |
| Organism | Vibrio pomeroyi strain LMG 20537 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 982784..993083
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV12_RS04375 | - | 985203..985475 (+) | 273 | WP_004736083.1 | HU family DNA-binding protein | - |
| OCV12_RS04380 | ppiD | 985695..987560 (+) | 1866 | WP_239847161.1 | peptidylprolyl isomerase | - |
| OCV12_RS04385 | comEA | 987784..988083 (+) | 300 | WP_261885430.1 | ComEA family DNA-binding protein | Machinery gene |
| OCV12_RS04390 | rrtA | 988074..988622 (-) | 549 | WP_261885431.1 | rhombosortase | - |
| OCV12_RS04395 | - | 988632..989231 (+) | 600 | WP_261885432.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| OCV12_RS04400 | - | 989258..990601 (-) | 1344 | WP_261885433.1 | anti-phage deoxyguanosine triphosphatase | - |
| OCV12_RS04405 | yfbR | 990657..991241 (-) | 585 | WP_261885434.1 | 5'-deoxynucleotidase | - |
| OCV12_RS04410 | - | 991410..992645 (-) | 1236 | WP_107899290.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10737.22 Da Isoelectric Point: 4.6283
>NTDB_id=92258 OCV12_RS04385 WP_261885430.1 987784..988083(+) (comEA) [Vibrio pomeroyi strain LMG 20537]
MRAIYSTLLLSLLVTFSSAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGNKKAKEIVDYREKNGEFSSADSLV
NVKGIGEATVEKNRERIQL
MRAIYSTLLLSLLVTFSSAVFADSPTKAELYDGIEITVNINTATAEELSALLVGVGNKKAKEIVDYREKNGEFSSADSLV
NVKGIGEATVEKNRERIQL
Nucleotide
Download Length: 300 bp
>NTDB_id=92258 OCV12_RS04385 WP_261885430.1 987784..988083(+) (comEA) [Vibrio pomeroyi strain LMG 20537]
ATGCGCGCGATATATTCAACATTACTTCTTTCACTTCTTGTTACCTTCAGCTCTGCAGTGTTTGCTGATAGCCCAACTAA
AGCTGAGCTATATGATGGCATTGAGATCACGGTAAACATCAACACAGCGACAGCAGAAGAGCTATCAGCATTATTGGTAG
GTGTGGGTAACAAGAAGGCGAAAGAGATCGTCGATTACAGAGAGAAAAACGGAGAATTCTCCTCCGCAGACAGCTTGGTT
AACGTGAAAGGGATAGGTGAGGCAACGGTTGAAAAGAACCGCGAAAGAATTCAGCTTTGA
ATGCGCGCGATATATTCAACATTACTTCTTTCACTTCTTGTTACCTTCAGCTCTGCAGTGTTTGCTGATAGCCCAACTAA
AGCTGAGCTATATGATGGCATTGAGATCACGGTAAACATCAACACAGCGACAGCAGAAGAGCTATCAGCATTATTGGTAG
GTGTGGGTAACAAGAAGGCGAAAGAGATCGTCGATTACAGAGAGAAAAACGGAGAATTCTCCTCCGCAGACAGCTTGGTT
AACGTGAAAGGGATAGGTGAGGCAACGGTTGAAAAGAACCGCGAAAGAATTCAGCTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
54.839 |
93.939 |
0.515 |
| comEA | Vibrio cholerae C6706 |
53.125 |
96.97 |
0.515 |
| comEA | Vibrio cholerae strain A1552 |
53.125 |
96.97 |
0.515 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.255 |
94.949 |
0.515 |
| comEA | Legionella pneumophila strain ERS1305867 |
38.235 |
100 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
38.235 |
100 |
0.394 |
| comEA | Acinetobacter baylyi ADP1 |
52.055 |
73.737 |
0.384 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
61.667 |
60.606 |
0.374 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60 |
60.606 |
0.364 |