Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U0O11_RS03705 Genome accession   NZ_CP142020
Coordinates   869901..871139 (-) Length   412 a.a.
NCBI ID   WP_324691720.1    Uniprot ID   -
Organism   Cobetia sp. D5 isolate Qingdao     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 864901..876139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0O11_RS03680 (U0O11_03680) argJ 865648..866871 (+) 1224 WP_317292723.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  U0O11_RS03685 (U0O11_03685) - 866979..867932 (+) 954 WP_324691714.1 Nudix family hydrolase -
  U0O11_RS03690 (U0O11_03690) yacG 868063..868308 (-) 246 WP_043332481.1 DNA gyrase inhibitor YacG -
  U0O11_RS03695 (U0O11_03695) coaE 868301..868951 (-) 651 WP_324691716.1 dephospho-CoA kinase -
  U0O11_RS03700 (U0O11_03700) pilD 868948..869808 (-) 861 WP_324691718.1 A24 family peptidase Machinery gene
  U0O11_RS03705 (U0O11_03705) pilC 869901..871139 (-) 1239 WP_324691720.1 type II secretion system F family protein Machinery gene
  U0O11_RS03710 (U0O11_03710) pilB 871315..873051 (-) 1737 WP_324691722.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U0O11_RS03715 (U0O11_03715) - 873623..874093 (+) 471 WP_324691724.1 pilin -
  U0O11_RS03720 (U0O11_03720) - 874137..874439 (-) 303 WP_043332474.1 hypothetical protein -
  U0O11_RS03725 (U0O11_03725) - 874610..875896 (-) 1287 WP_324691726.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44789.14 Da        Isoelectric Point: 9.8485

>NTDB_id=921098 U0O11_RS03705 WP_324691720.1 869901..871139(-) (pilC) [Cobetia sp. D5 isolate Qingdao]
MATPRTARKDKKKAGIETWQWSGKNSRGENVKGELMSANVDQVKNTLVSQGIVVKRLRKKSSLFGGSKKVSGKDVTMFAR
QMATMIRAGVPVLQAFGIVAESMKSPGMRHLVEDMMNQVGAGASFSEALRKHPQHFDNLFANLVEAGEQAGALDKMLDRV
ATYKEKIDSLKARVKKALYYPIAVIGVGIGVTAILLIKVVPQFESLFQGFGAELPAFTQLTITLSEYAQNYWYVALGAII
LTVVLIAQGIKRSEKFAYASHRFMLKVPVLGDILDKSSVARYSRTLATTFQAGVPLVESLDTAAGASGNKVYERAIAQIK
EDVSTGQQLNFAMRNTQLFPTLAVQMVAIGEESGSLDAMLNKVADFYEEDVDNKVDALTSLLEPLIIVVLGTLVGGLVVS
MYLPIFELGNAI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=921098 U0O11_RS03705 WP_324691720.1 869901..871139(-) (pilC) [Cobetia sp. D5 isolate Qingdao]
ATGGCAACTCCCAGAACTGCCAGGAAAGACAAGAAAAAAGCGGGCATTGAAACTTGGCAATGGTCGGGCAAGAACTCGCG
CGGTGAAAACGTCAAGGGCGAGCTGATGTCGGCCAACGTCGATCAGGTCAAGAACACGCTGGTCAGCCAGGGGATCGTGG
TCAAGCGCCTGCGCAAGAAGTCCTCCCTGTTTGGCGGCAGCAAGAAGGTCAGTGGCAAGGATGTCACCATGTTCGCCCGT
CAGATGGCGACCATGATCCGTGCTGGCGTACCGGTACTTCAGGCATTTGGCATCGTGGCTGAAAGCATGAAGAGTCCAGG
CATGCGTCATCTGGTCGAAGACATGATGAATCAGGTGGGGGCAGGCGCCAGCTTTTCGGAAGCCTTGCGCAAACACCCTC
AGCATTTTGATAACCTGTTTGCCAATCTTGTTGAAGCCGGCGAACAAGCTGGTGCCCTGGACAAGATGCTCGACCGTGTC
GCGACTTATAAAGAAAAGATTGATTCACTCAAGGCGCGCGTCAAGAAAGCCCTTTATTACCCTATCGCCGTGATAGGCGT
CGGGATCGGGGTAACAGCGATCCTGTTGATCAAGGTAGTCCCGCAATTTGAAAGCCTTTTCCAAGGCTTCGGCGCAGAGC
TGCCAGCATTTACCCAGCTGACGATCACCTTGTCCGAGTATGCGCAGAATTATTGGTATGTGGCATTAGGCGCGATAATC
CTGACCGTCGTACTTATTGCGCAGGGAATCAAGCGCTCTGAGAAGTTTGCCTATGCCAGTCACCGCTTCATGCTCAAGGT
ACCTGTGCTCGGCGATATTCTGGATAAATCGTCTGTCGCTCGTTATTCACGCACATTGGCCACGACCTTCCAGGCAGGTG
TTCCGTTAGTGGAATCGCTAGATACTGCCGCCGGCGCCTCAGGCAACAAGGTGTATGAGCGCGCCATTGCTCAGATCAAG
GAAGATGTCTCTACCGGCCAGCAACTGAACTTTGCCATGCGCAATACCCAGTTGTTCCCGACACTGGCGGTACAGATGGT
GGCGATTGGCGAGGAATCCGGCTCACTGGATGCCATGCTCAACAAGGTGGCGGATTTCTATGAAGAAGACGTCGACAACA
AGGTAGATGCGCTGACCTCATTGCTGGAGCCCTTGATCATCGTGGTGCTAGGCACCCTGGTGGGCGGGCTTGTGGTCTCG
ATGTATCTTCCCATCTTCGAGCTGGGCAACGCGATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-404)

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.215

95.874

0.549
  pilC Acinetobacter baumannii D1279779

52.346

98.301

0.515
  pilC Acinetobacter baylyi ADP1

52.346

98.301

0.515
  pilC Legionella pneumophila strain ERS1305867

51.852

98.301

0.51
  pilC Vibrio cholerae strain A1552

45.57

95.874

0.437
  pilC Vibrio campbellii strain DS40M4

44.192

96.117

0.425
  pilG Neisseria meningitidis 44/76-A

41.176

99.029

0.408
  pilG Neisseria gonorrhoeae MS11

41.176

99.029

0.408