Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   U0O11_RS03700 Genome accession   NZ_CP142020
Coordinates   868948..869808 (-) Length   286 a.a.
NCBI ID   WP_324691718.1    Uniprot ID   -
Organism   Cobetia sp. D5 isolate Qingdao     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 863948..874808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0O11_RS03680 (U0O11_03680) argJ 865648..866871 (+) 1224 WP_317292723.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  U0O11_RS03685 (U0O11_03685) - 866979..867932 (+) 954 WP_324691714.1 Nudix family hydrolase -
  U0O11_RS03690 (U0O11_03690) yacG 868063..868308 (-) 246 WP_043332481.1 DNA gyrase inhibitor YacG -
  U0O11_RS03695 (U0O11_03695) coaE 868301..868951 (-) 651 WP_324691716.1 dephospho-CoA kinase -
  U0O11_RS03700 (U0O11_03700) pilD 868948..869808 (-) 861 WP_324691718.1 A24 family peptidase Machinery gene
  U0O11_RS03705 (U0O11_03705) pilC 869901..871139 (-) 1239 WP_324691720.1 type II secretion system F family protein Machinery gene
  U0O11_RS03710 (U0O11_03710) pilB 871315..873051 (-) 1737 WP_324691722.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U0O11_RS03715 (U0O11_03715) - 873623..874093 (+) 471 WP_324691724.1 pilin -
  U0O11_RS03720 (U0O11_03720) - 874137..874439 (-) 303 WP_043332474.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31156.37 Da        Isoelectric Point: 8.2191

>NTDB_id=921097 U0O11_RS03700 WP_324691718.1 868948..869808(-) (pilD) [Cobetia sp. D5 isolate Qingdao]
MESLAQLSPTLQACLAGIFGLLVGSFLNVVITRLPVMMMRQWRAEAREALELEAEDTPRFNLLVPASRCPGCDTPIKWHD
NLPILGWLKRRGRCASCNTRISAQYPLVELAGGTLGASIALIYGLEAQSLWIFGACLTLLVLSVIDFRTQLLPDAITLPL
LWAGLAYQLLFQPLMLPSAVIGAMAGYLVLWSFYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQWLPLLLILSAGLGAVL
GILLQLLVPRLRGAPMPFGPYLAVAGWIALLFGTPLMSLYLSVIGA

Nucleotide


Download         Length: 861 bp        

>NTDB_id=921097 U0O11_RS03700 WP_324691718.1 868948..869808(-) (pilD) [Cobetia sp. D5 isolate Qingdao]
GTGGAATCACTCGCCCAACTTTCCCCCACACTGCAGGCCTGCCTGGCCGGTATATTCGGTTTGCTGGTTGGCAGCTTTCT
GAATGTCGTCATCACTCGCCTGCCCGTGATGATGATGCGCCAATGGCGCGCCGAGGCCCGCGAGGCATTGGAGCTGGAAG
CCGAAGACACACCGCGCTTCAATCTGCTGGTGCCAGCATCACGCTGCCCGGGCTGTGACACGCCGATCAAGTGGCACGAC
AACCTCCCCATTCTCGGCTGGCTGAAACGGCGTGGTCGCTGCGCCAGCTGCAATACGCGCATCAGCGCGCAGTACCCGCT
GGTGGAACTGGCCGGTGGCACGCTTGGCGCGTCCATCGCGCTGATCTACGGCCTGGAGGCACAGAGCCTGTGGATCTTCG
GCGCCTGTCTGACCCTGCTGGTGCTGTCAGTCATCGACTTCCGCACCCAGCTGCTGCCAGATGCCATCACCCTGCCACTG
CTGTGGGCAGGCCTCGCCTATCAGTTGCTGTTCCAGCCTCTGATGCTGCCCAGTGCCGTGATCGGCGCGATGGCGGGGTA
TCTGGTGCTGTGGAGCTTCTACTGGCTATTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTACGGTGACTTCAAGCTAC
TTGCCGCTCTTGGTGCCTGGCTCGGCTGGCAGTGGTTGCCGCTGTTGCTGATTCTGTCCGCCGGTCTCGGGGCCGTTCTG
GGCATCCTGCTGCAACTGCTGGTACCGCGTCTGCGCGGCGCCCCGATGCCCTTCGGCCCTTACCTGGCGGTTGCCGGCTG
GATCGCCCTGCTGTTTGGTACGCCCTTGATGAGCCTCTACCTGAGCGTGATCGGCGCATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-121)

Type IV leader peptidase family (Peptidase_A24)

(136-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.941

100

0.535
  pilD Vibrio campbellii strain DS40M4

47.163

98.601

0.465
  pilD Neisseria gonorrhoeae MS11

48.54

95.804

0.465
  pilD Acinetobacter baumannii D1279779

47.744

93.007

0.444
  pilD Acinetobacter nosocomialis M2

47.368

93.007

0.441