Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU78_RS14315 Genome accession   NZ_AP025490
Coordinates   3243616..3244737 (-) Length   373 a.a.
NCBI ID   WP_137375393.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3238616..3249737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS14285 hemF 3239156..3240073 (-) 918 WP_137375387.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU78_RS14290 - 3240093..3240650 (-) 558 WP_137375388.1 L-threonylcarbamoyladenylate synthase -
  OCU78_RS14295 purE 3240846..3241331 (+) 486 WP_137375389.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU78_RS14300 - 3241337..3242467 (+) 1131 WP_137375390.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU78_RS14305 - 3242555..3243124 (-) 570 WP_137375391.1 type I DNA topoisomerase -
  OCU78_RS14310 - 3243137..3243613 (-) 477 WP_137375392.1 DUF494 family protein -
  OCU78_RS14315 dprA 3243616..3244737 (-) 1122 WP_137375393.1 DNA-processing protein DprA Machinery gene
  OCU78_RS14320 - 3244734..3245855 (-) 1122 WP_137375394.1 LysM peptidoglycan-binding domain-containing protein -
  OCU78_RS14325 def 3245996..3246511 (+) 516 WP_206383712.1 peptide deformylase -
  OCU78_RS14330 fmt 3246546..3247511 (+) 966 WP_137375396.1 methionyl-tRNA formyltransferase -
  OCU78_RS14335 rsmB 3247629..3248909 (+) 1281 WP_137375397.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 40537.51 Da        Isoelectric Point: 6.9721

>NTDB_id=92071 OCU78_RS14315 WP_137375393.1 3243616..3244737(-) (dprA) [Vibrio gallaecicus strain CECT 7244]
MNEQELSAWLTLSFIPQLGGKRLSRLLAFDSPLNIVQSSSQQLQAFGLSPKQVSYLFEKAPKEVDDCLAWLNKHSNHHII
TSSCSLYPKQLANIASAPSVLFVKGQADKLIEPQIAMVGSRNATLEGLNTAKLFAQEFVKKGLIVTSGLALGIDGYAHDG
ALKAGGETFAVLGSGLESIYPARHRSLAERIVESGALISEFRPHAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYALEQDREVFALPGSIHTPTSRGGNSLIKAGACLVQSAHDVLFELESLLHWSIEQQPSLFPTQEPSLTVSQNEQLPFP
QLLANVGIEATPVDILAQRTHIPVHEVMMQLLELELLGHVVAVSGGYIRKGRD

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=92071 OCU78_RS14315 WP_137375393.1 3243616..3244737(-) (dprA) [Vibrio gallaecicus strain CECT 7244]
GTGAATGAGCAGGAGCTTTCTGCTTGGCTAACTCTTAGCTTCATTCCTCAACTCGGCGGGAAGCGACTTTCCCGCCTGCT
GGCATTTGACTCGCCTTTAAATATTGTTCAATCTTCCTCGCAACAGCTTCAAGCTTTTGGCTTATCACCTAAGCAAGTTT
CTTACCTTTTTGAAAAAGCACCTAAAGAAGTGGATGATTGCCTTGCTTGGTTAAATAAGCATTCAAACCATCATATAATT
ACTTCGTCTTGTTCCCTTTATCCGAAACAGTTAGCAAATATTGCCTCTGCGCCGAGCGTACTATTTGTAAAAGGGCAGGC
TGATAAATTAATTGAACCTCAAATAGCTATGGTCGGTAGTAGAAATGCCACTTTAGAAGGTCTTAATACTGCGAAGTTAT
TTGCTCAGGAGTTTGTGAAAAAAGGGTTGATAGTGACTAGCGGGTTAGCGTTAGGCATTGATGGCTATGCGCATGATGGA
GCTTTAAAGGCGGGAGGAGAAACTTTCGCGGTTTTAGGTTCTGGTCTAGAGTCTATTTACCCCGCAAGGCATCGGAGTTT
GGCCGAGAGAATTGTAGAAAGTGGTGCTTTAATTTCTGAATTTCGTCCTCACGCTAAACCTCGACCTGAACATTTCCCTC
GCCGTAACCGTATTATTAGTGGCTTGTCTTTAGGTACGTTAGTGGTTGAGGCGGCTGAAAAGAGTGGTTCGCTTATCACA
GCTCGGTATGCATTGGAGCAAGACAGAGAAGTCTTCGCGCTTCCTGGCTCTATCCACACTCCTACTAGTCGAGGCGGAAA
TAGTTTAATAAAAGCAGGTGCTTGCCTAGTTCAAAGTGCTCACGATGTTTTATTCGAATTAGAAAGCCTACTACATTGGT
CAATAGAACAGCAGCCCAGCTTGTTTCCAACTCAAGAACCTTCCTTAACAGTCAGTCAAAATGAACAATTGCCATTTCCA
CAGCTGTTAGCTAACGTAGGAATAGAAGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAAGT
CATGATGCAGCTTTTGGAGCTTGAACTCCTTGGGCATGTTGTTGCAGTTTCTGGTGGCTATATTCGAAAGGGGAGAGACT
AG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(321-366)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.879

100

0.649
  dprA Vibrio cholerae strain A1552

57.909

100

0.579
  dprA Glaesserella parasuis strain SC1401

46.561

100

0.472
  dprA Legionella pneumophila strain ERS1305867

43.324

98.391

0.426
  dprA Haemophilus influenzae Rd KW20

43.824

91.153

0.399
  dprA Neisseria meningitidis strain C311

37.093

100

0.397
  dprA Neisseria meningitidis MC58

37.093

100

0.397
  dprA Neisseria gonorrhoeae strain FA1090

36.07

100

0.389
  dprA Neisseria gonorrhoeae MS11

36.07

100

0.389

Multiple sequence alignment