Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   VO177_RS16675 Genome accession   NZ_CP141828
Coordinates   3312969..3314219 (-) Length   416 a.a.
NCBI ID   WP_021493669.1    Uniprot ID   -
Organism   Bacillus velezensis strain TZS01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3307969..3319219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS16660 (VO177_16660) rny 3308555..3310114 (-) 1560 WP_003154140.1 ribonuclease Y -
  VO177_RS16665 (VO177_16665) - 3310407..3311588 (-) 1182 WP_021493668.1 serine hydrolase domain-containing protein -
  VO177_RS16670 (VO177_16670) recA 3311755..3312798 (-) 1044 WP_003154145.1 recombinase RecA Machinery gene
  VO177_RS16675 (VO177_16675) cinA 3312969..3314219 (-) 1251 WP_021493669.1 competence/damage-inducible protein A Machinery gene
  VO177_RS16680 (VO177_16680) pgsA 3314237..3314818 (-) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VO177_RS16685 (VO177_16685) - 3314892..3315791 (-) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  VO177_RS16690 (VO177_16690) - 3315810..3316601 (-) 792 WP_003154149.1 DUF3388 domain-containing protein -
  VO177_RS16695 (VO177_16695) - 3316730..3316987 (-) 258 WP_003154150.1 DUF3243 domain-containing protein -
  VO177_RS16700 (VO177_16700) ymfI 3317063..3317791 (-) 729 WP_014417800.1 elongation factor P 5-aminopentanone reductase -
  VO177_RS16705 (VO177_16705) yfmH 3317851..3319137 (-) 1287 WP_017417796.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45058.41 Da        Isoelectric Point: 5.1492

>NTDB_id=919984 VO177_RS16675 WP_021493669.1 3312969..3314219(-) (cinA) [Bacillus velezensis strain TZS01]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFVKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
CPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=919984 VO177_RS16675 WP_021493669.1 3312969..3314219(-) (cinA) [Bacillus velezensis strain TZS01]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGGCCGACCAAGGACGATTTA
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGTGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
TGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGTTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTCGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCCGCAGGAAGGGCATGCTCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mitis SK321

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382