Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCW38_RS02740 Genome accession   NZ_AP025480
Coordinates   558012..559241 (-) Length   409 a.a.
NCBI ID   WP_261895000.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553012..564241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS02700 rpsP 553145..553393 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  OCW38_RS02705 rimM 553418..553972 (+) 555 WP_016768202.1 ribosome maturation factor RimM -
  OCW38_RS02710 trmD 553999..554739 (+) 741 WP_010435912.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OCW38_RS02715 rplS 554799..555152 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  OCW38_RS02720 yacG 555413..555610 (-) 198 WP_010435916.1 DNA gyrase inhibitor YacG -
  OCW38_RS02725 zapD 555692..556432 (-) 741 WP_010435917.1 cell division protein ZapD -
  OCW38_RS02730 coaE 556459..557073 (-) 615 WP_010435920.1 dephospho-CoA kinase -
  OCW38_RS02735 pilD 557076..557945 (-) 870 WP_102397192.1 A24 family peptidase Machinery gene
  OCW38_RS02740 pilC 558012..559241 (-) 1230 WP_261895000.1 type II secretion system F family protein Machinery gene
  OCW38_RS02745 pilB 559256..560941 (-) 1686 WP_261895002.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCW38_RS02750 - 560941..561405 (-) 465 WP_261895004.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OCW38_RS02755 nadC 561661..562551 (-) 891 WP_261895006.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCW38_RS02760 ampD 562635..563234 (+) 600 WP_261895008.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45163.10 Da        Isoelectric Point: 10.0101

>NTDB_id=91917 OCW38_RS02740 WP_261895000.1 558012..559241(-) (pilC) [Vibrio cyclitrophicus strain LMG 21359]
MSSKSKQSQLKNYHWKGINSSGKKMSGQSLALTELEVREKLKEQYIQIKKIKKKSISAITRLTHQVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKAKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLDLSHWMQAYSFYTALGIGATSL
VVHQLCQRSYSIRLSASRLVLRFPVLGGVMAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGSLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=91917 OCW38_RS02740 WP_261895000.1 558012..559241(-) (pilC) [Vibrio cyclitrophicus strain LMG 21359]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATCAATAGTTCTGGCAAGAAAATGTCTGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGAGAGAAGCTCAAAGAGCAATATATCCAAATTAAGAAAATCAAAAAGA
AAAGTATCTCCGCAATCACTCGTTTAACTCATCAAGTCAAAGCCAAAGACATCACTATTTTGACGAGACAGCTTGCTACC
ATGCTCGCTACGGGTGTGCCTATCGTGCAAGCCATAAAGTTGGTATCAGATAATCATCGTAAAGCAGAAATGAAATCTAT
TTTATCGCATATCTGCAAAGGTGTAGAAGCCGGAACGCCAATCTCAAAAGCAATGAGAACCGCAAGCCGCCACTTTGACG
ATCTCTACACCGACCTAGTCGCCACCGGAGAGCTTTCCGGCAACCTCGCACAAGTCTTTGAACGCTTAGCGACCTATCGT
GAAAAAAGTGAACAGTTAAAAGCTAAGGTGGTGAAAGCGCTTATCTATCCAGCAATGGTGGTCACGGTTGCGCTGACCGT
CTCCTATCTCATGCTCACCATGGTCATCCCAGAGTTTGAATCGATGTTTTCAGGCTTTGGTGCCGATCTTCCCTGGTTCA
CCCAACAAGTCCTCGACCTGTCTCATTGGATGCAAGCTTACAGTTTTTATACCGCCCTAGGCATCGGGGCTACCAGCCTG
GTTGTTCATCAACTGTGCCAACGTTCTTACTCGATTCGACTATCAGCCAGCCGCTTAGTGTTACGCTTTCCTGTACTAGG
TGGCGTAATGGCAAAGGCCTCTATCGCCAAGTTCAGCCGCACCTTATCAACCAGCTTTAGTTCTGGTATTCCGATTCTAA
TGAGCCTCAAAACTACAGCCAAAACCGCAGGCAGTCTGCATTATGAATCTGCGATCATCGAAGTACACCGAGAAACAGCC
GCGGGTATGCCGATGTATATTGCAATGCGCAATACCAATGCCTTCCCTGAAATGGTGTTACAGATGGTGATGATTGGTGA
AGAGTCAGGTAACCTTGATGATATGCTGAATAAAGTCGCTTCCATCTATGAGTTTGAAGTCGACAATACCGTCGACAACT
TAGGCAAAATTTTAGAGCCACTGATCATCGTGTTTTTAGGTACAGTTGTGGGTGGGCTTGTTGTCGCGATGTACTTACCA
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79

97.8

0.773
  pilC Vibrio campbellii strain DS40M4

73.284

99.756

0.731
  pilC Acinetobacter baylyi ADP1

42.054

100

0.421
  pilC Legionella pneumophila strain ERS1305867

42.145

98.044

0.413
  pilC Acinetobacter baumannii D1279779

41.584

98.778

0.411
  pilC Pseudomonas stutzeri DSM 10701

40.347

98.778

0.399
  pilG Neisseria gonorrhoeae MS11

39.599

97.555

0.386
  pilG Neisseria meningitidis 44/76-A

39.348

97.555

0.384

Multiple sequence alignment