Detailed information NTG0091916

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCW38_RS02735
• Genome accession: NZ_AP025480
• Coordinates: 557076..557945 (-)
• Length: 289 a.a.
• NCBI ID: WP_102397192.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain LMG 21359
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 552076..562945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCW38_RS02700	rpsP	553145..553393 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
OCW38_RS02705	rimM	553418..553972 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
OCW38_RS02710	trmD	553999..554739 (+)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCW38_RS02715	rplS	554799..555152 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
OCW38_RS02720	yacG	555413..555610 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
OCW38_RS02725	zapD	555692..556432 (-)	741	WP_010435917.1	cell division protein ZapD	-
OCW38_RS02730	coaE	556459..557073 (-)	615	WP_010435920.1	dephospho-CoA kinase	-
OCW38_RS02735	pilD	557076..557945 (-)	870	WP_102397192.1	A24 family peptidase	Machinery gene
OCW38_RS02740	pilC	558012..559241 (-)	1230	WP_261895000.1	type II secretion system F family protein	Machinery gene
OCW38_RS02745	pilB	559256..560941 (-)	1686	WP_261895002.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCW38_RS02750	-	560941..561405 (-)	465	WP_261895004.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OCW38_RS02755	nadC	561661..562551 (-)	891	WP_261895006.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32518.75 Da
• Isoelectric Point: 7.8864

>NTDB_id=91916 OCW38_RS02735 WP_102397192.1 557076..557945(-) (pilD) [Vibrio cyclitrophicus strain LMG 21359]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQCKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=91916 OCW38_RS02735 WP_102397192.1 557076..557945(-) (pilD) [Vibrio cyclitrophicus strain LMG 21359]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATGTAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.356	100	0.734
pilD	Vibrio cholerae strain A1552	68.75	99.654	0.685
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446