Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VNN51_RS04100 Genome accession   NZ_CP141727
Coordinates   832838..833332 (+) Length   164 a.a.
NCBI ID   WP_346349603.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 827838..838332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS04080 (VNN51_04080) - 827850..828470 (+) 621 WP_213432838.1 hypothetical protein -
  VNN51_RS04085 (VNN51_04085) dnaX 828483..830147 (+) 1665 WP_279360876.1 DNA polymerase III subunit gamma/tau -
  VNN51_RS04090 (VNN51_04090) - 830171..831634 (-) 1464 WP_017369522.1 amino acid permease -
  VNN51_RS04095 (VNN51_04095) rpsF 832507..832800 (+) 294 WP_003133129.1 30S ribosomal protein S6 -
  VNN51_RS04100 (VNN51_04100) ssbA 832838..833332 (+) 495 WP_346349603.1 single-stranded DNA-binding protein Machinery gene
  VNN51_RS04105 (VNN51_04105) rpsR 833452..833697 (+) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN51_RS04110 (VNN51_04110) - 833806..834573 (+) 768 WP_253008920.1 metallophosphoesterase -
  VNN51_RS04115 (VNN51_04115) - 834607..834915 (-) 309 WP_096368946.1 DUF960 domain-containing protein -
  VNN51_RS04120 (VNN51_04120) - 834947..835795 (-) 849 WP_017369518.1 MurR/RpiR family transcriptional regulator -
  VNN51_RS04125 (VNN51_04125) recX 835879..836712 (-) 834 WP_253008922.1 recombination regulator RecX -
  VNN51_RS04130 (VNN51_04130) - 836807..838000 (-) 1194 WP_253008926.1 MFS transporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18018.94 Da        Isoelectric Point: 6.3781

>NTDB_id=919038 VNN51_RS04100 WP_346349603.1 832838..833332(+) (ssbA) [Lactococcus formosensis strain M20011502 FF20a2]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGERKADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=919038 VNN51_RS04100 WP_346349603.1 832838..833332(+) (ssbA) [Lactococcus formosensis strain M20011502 FF20a2]
ATGATTAATAATGTTGTTTTGGTTGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAGCGTAAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAGGAAGGTCAACGTGTTTACGTGACCGAGGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
TGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGCAATTCAACACCTGATTTTGGTCGTGATGCAGATCCGTTTGGTGGCTCACCAATGGAAATTTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.933

100

0.585
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.585
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae D39

47.727

80.488

0.384
  ssbB/cilA Streptococcus pneumoniae R6

47.727

80.488

0.384
  ssbB/cilA Streptococcus mitis SK321

47.727

80.488

0.384
  ssbB/cilA Streptococcus mitis NCTC 12261

47.727

80.488

0.384
  ssbB/cilA Streptococcus pneumoniae Rx1

47.727

80.488

0.384
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.634

0.366