Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   VNN51_RS01475 Genome accession   NZ_CP141727
Coordinates   297130..297771 (-) Length   213 a.a.
NCBI ID   WP_253008126.1    Uniprot ID   A0A9X4PBP4
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 292130..302771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS01450 (VNN51_01450) atpF 292270..292776 (-) 507 WP_017368854.1 F0F1 ATP synthase subunit B -
  VNN51_RS01455 (VNN51_01455) atpB 292790..293503 (-) 714 WP_017368853.1 F0F1 ATP synthase subunit A -
  VNN51_RS01460 (VNN51_01460) - 293558..293773 (-) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  VNN51_RS01465 (VNN51_01465) - 293969..294745 (-) 777 WP_026063772.1 alpha/beta hydrolase family protein -
  VNN51_RS01470 (VNN51_01470) - 294900..297110 (-) 2211 Protein_290 DNA internalization-related competence protein ComEC/Rec2 -
  VNN51_RS01475 (VNN51_01475) comEA/celA/cilE 297130..297771 (-) 642 WP_253008126.1 helix-hairpin-helix domain-containing protein Machinery gene
  VNN51_RS01480 (VNN51_01480) - 297829..299004 (-) 1176 WP_017368849.1 SLC13 family permease -
  VNN51_RS01485 (VNN51_01485) - 299169..300725 (-) 1557 WP_017368848.1 ABC-F family ATP-binding cassette domain-containing protein -
  VNN51_RS01490 (VNN51_01490) sufB 301178..302575 (-) 1398 WP_017368847.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23449.65 Da        Isoelectric Point: 5.5440

>NTDB_id=919016 VNN51_RS01475 WP_253008126.1 297130..297771(-) (comEA/celA/cilE) [Lactococcus formosensis strain M20011502 FF20a2]
MKKLTEYINENLKTIVGVVLALTILGIFYWNKKVPDLPKKEEGLPEWVEGSKEKDGSEKKNTEKVDEDEIIVDVKGAVKK
PGIYKLSSKNRVSDAVASAGGFTEEAERKGINLAKKLQDEAEVYVPLRGEADTNHLLENTGNTNKTAKKAKININTADLT
ELQQLSGVGAKKAQDILDYRSENGSFQTVEELTKVSGFGPKTLEKLKEAITVD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=919016 VNN51_RS01475 WP_253008126.1 297130..297771(-) (comEA/celA/cilE) [Lactococcus formosensis strain M20011502 FF20a2]
ATGAAAAAACTAACAGAATATATAAATGAAAATTTAAAAACTATTGTTGGAGTTGTTTTAGCATTGACTATTTTAGGTAT
ATTTTACTGGAATAAAAAAGTTCCTGATCTGCCTAAGAAAGAAGAAGGTTTACCTGAGTGGGTAGAGGGAAGCAAGGAAA
AAGACGGTTCAGAGAAGAAAAATACTGAAAAGGTAGATGAGGATGAAATCATTGTTGATGTTAAAGGCGCTGTTAAAAAA
CCTGGTATCTACAAATTGTCTTCAAAAAACCGTGTATCCGATGCAGTAGCAAGTGCTGGTGGTTTTACGGAAGAAGCGGA
GAGAAAAGGAATAAATCTGGCAAAAAAGTTGCAAGATGAAGCTGAAGTTTATGTTCCCTTGCGAGGGGAAGCAGATACAA
ATCACTTGTTAGAAAACACAGGAAATACCAACAAAACCGCCAAAAAAGCAAAAATTAATATTAATACAGCAGATTTAACT
GAATTGCAGCAACTTAGTGGTGTGGGAGCAAAAAAAGCACAAGATATACTGGATTACCGTTCTGAAAATGGTTCCTTTCA
GACAGTGGAAGAATTGACTAAGGTGAGCGGATTTGGCCCTAAAACATTAGAAAAATTGAAAGAAGCAATCACAGTAGATT
AG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(149-211)

SLBB domain (SLBB)

(71-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis SK321

47.489

100

0.488
  comEA/celA/cilE Streptococcus mitis NCTC 12261

45.413

100

0.465
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

45.205

100

0.465
  comEA/celA/cilE Streptococcus pneumoniae R6

44.292

100

0.455
  comEA/celA/cilE Streptococcus pneumoniae Rx1

44.292

100

0.455
  comEA/celA/cilE Streptococcus pneumoniae D39

44.292

100

0.455
  comEA Lactococcus lactis subsp. cremoris KW2

43.243

100

0.451
  comEA Latilactobacillus sakei subsp. sakei 23K

36.937

100

0.385
  comEA Staphylococcus aureus MW2

36.073

100

0.371
  comEA Staphylococcus aureus N315

35.16

100

0.362