Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   VNN48_RS08855 Genome accession   NZ_CP141723
Coordinates   1815854..1816495 (+) Length   213 a.a.
NCBI ID   WP_407281151.1    Uniprot ID   -
Organism   Lactococcus formosensis strain PAQ-208     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1810854..1821495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS08840 (VNN48_08835) sufB 1811204..1812601 (+) 1398 WP_017368847.1 Fe-S cluster assembly protein SufB -
  VNN48_RS08845 (VNN48_08840) - 1812900..1814456 (+) 1557 WP_017368848.1 ABC-F family ATP-binding cassette domain-containing protein -
  VNN48_RS08850 (VNN48_08845) - 1814621..1815796 (+) 1176 WP_017368849.1 SLC13 family permease -
  VNN48_RS08855 (VNN48_08850) comEA/celA/cilE 1815854..1816495 (+) 642 WP_407281151.1 helix-hairpin-helix domain-containing protein Machinery gene
  VNN48_RS08860 (VNN48_08855) comEC 1816515..1818731 (+) 2217 WP_407281152.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VNN48_RS08865 (VNN48_08860) - 1818886..1819662 (+) 777 WP_026063772.1 alpha/beta hydrolase family protein -
  VNN48_RS08870 (VNN48_08865) - 1819858..1820073 (+) 216 WP_003135074.1 F0F1 ATP synthase subunit C -
  VNN48_RS08875 (VNN48_08870) atpB 1820128..1820841 (+) 714 WP_017368853.1 F0F1 ATP synthase subunit A -
  VNN48_RS08880 (VNN48_08875) atpF 1820855..1821361 (+) 507 WP_017368854.1 F0F1 ATP synthase subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23453.64 Da        Isoelectric Point: 5.5440

>NTDB_id=918953 VNN48_RS08855 WP_407281151.1 1815854..1816495(+) (comEA/celA/cilE) [Lactococcus formosensis strain PAQ-208]
MKKLTEYINENLKTIVGVVLALTILGIFYWNKKVPDLPKKEEGLPEWVEGSKEKDGSEKKNTEKVDEDEIIVDVKGAVKK
TGIYKLSSKNRVSDAVASAGGFTEEAERKGINLAKKLQDEAEVYVPLRGEADTNHLLENTGNTNKTAKKAKININTADLT
ELQQLSGVGAKKAQDILDYRSENGSFQTVEELTKVSGFGPKTLEKLKEAITVD

Nucleotide


Download         Length: 642 bp        

>NTDB_id=918953 VNN48_RS08855 WP_407281151.1 1815854..1816495(+) (comEA/celA/cilE) [Lactococcus formosensis strain PAQ-208]
ATGAAAAAACTAACAGAATATATAAATGAAAATTTAAAAACTATTGTTGGAGTTGTTTTAGCATTGACTATTTTAGGTAT
ATTTTACTGGAATAAAAAAGTTCCTGATCTGCCTAAGAAAGAAGAAGGTTTACCTGAGTGGGTAGAGGGAAGCAAGGAAA
AAGACGGTTCAGAGAAGAAAAATACTGAAAAGGTAGATGAGGATGAAATCATTGTTGATGTTAAAGGCGCTGTTAAAAAA
ACTGGTATCTACAAATTGTCTTCAAAAAACCGTGTATCCGATGCAGTAGCAAGTGCTGGTGGTTTTACGGAAGAAGCGGA
GAGAAAAGGAATAAATCTGGCAAAAAAGTTGCAAGATGAAGCTGAAGTTTATGTTCCTTTGCGAGGGGAAGCAGATACAA
ATCACTTGTTAGAAAACACAGGAAATACCAACAAAACCGCCAAAAAAGCAAAAATTAATATTAATACAGCAGATTTAACT
GAATTGCAGCAACTTAGTGGTGTGGGAGCAAAAAAAGCACAAGATATACTGGATTACCGTTCTGAAAATGGTTCCTTTCA
GACAGTGGAAGAATTGACTAAGGTGAGCGGATTTGGCCCTAAAACATTAGAAAAATTGAAAGAAGCAATCACAGTAGATT
AG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(149-211)

SLBB domain (SLBB)

(71-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis SK321

47.032

100

0.484
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

44.749

100

0.46
  comEA/celA/cilE Streptococcus mitis NCTC 12261

44.954

100

0.46
  comEA/celA/cilE Streptococcus pneumoniae D39

43.836

100

0.451
  comEA/celA/cilE Streptococcus pneumoniae Rx1

43.836

100

0.451
  comEA/celA/cilE Streptococcus pneumoniae R6

43.836

100

0.451
  comEA Lactococcus lactis subsp. cremoris KW2

42.793

100

0.446
  comEA Latilactobacillus sakei subsp. sakei 23K

36.486

100

0.38
  comEA Staphylococcus aureus MW2

35.616

100

0.366