Detailed information NTG0918954

Bioinformatically predicted

Overview

• Name: comEC
• Type: Machinery gene
• Locus tag: VNN48_RS08860
• Genome accession: NZ_CP141723
• Coordinates: 1816515..1818731 (+)
• Length: 738 a.a.
• NCBI ID: WP_407281152.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain PAQ-208
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1811515..1823731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN48_RS08845 (VNN48_08840)	-	1812900..1814456 (+)	1557	WP_017368848.1	ABC-F family ATP-binding cassette domain-containing protein	-
VNN48_RS08850 (VNN48_08845)	-	1814621..1815796 (+)	1176	WP_017368849.1	SLC13 family permease	-
VNN48_RS08855 (VNN48_08850)	comEA/celA/cilE	1815854..1816495 (+)	642	WP_407281151.1	helix-hairpin-helix domain-containing protein	Machinery gene
VNN48_RS08860 (VNN48_08855)	comEC	1816515..1818731 (+)	2217	WP_407281152.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
VNN48_RS08865 (VNN48_08860)	-	1818886..1819662 (+)	777	WP_026063772.1	alpha/beta hydrolase family protein	-
VNN48_RS08870 (VNN48_08865)	-	1819858..1820073 (+)	216	WP_003135074.1	F0F1 ATP synthase subunit C	-
VNN48_RS08875 (VNN48_08870)	atpB	1820128..1820841 (+)	714	WP_017368853.1	F0F1 ATP synthase subunit A	-
VNN48_RS08880 (VNN48_08875)	atpF	1820855..1821361 (+)	507	WP_017368854.1	F0F1 ATP synthase subunit B	-
VNN48_RS08885 (VNN48_08880)	-	1821376..1821903 (+)	528	WP_017368855.1	F0F1 ATP synthase subunit delta	-
VNN48_RS08890 (VNN48_08885)	atpA	1821969..1823477 (+)	1509	WP_004259170.1	F0F1 ATP synthase subunit alpha	-

Sequence

Protein

• Length: 738 a.a.
• Molecular weight: 84921.07 Da
• Isoelectric Point: 9.9010

>NTDB_id=918954 VNN48_RS08860 WP_407281152.1 1816515..1818731(+) (comEC) [Lactococcus formosensis strain PAQ-208]
MKQKFSLIYLVYLLVLVYFLIFSFSWPIIVFSLFSIIVALYRQYYGLLALLLCFSLFLHMVKKEDELQENKQPAKISKIT
PYMDTLQVNGSRLSFRGEVDGRDYQAFYTLSSEKEKEYFKNLAVKGTLYLEGTLEIPEGQRNFTGFDYRKYLRTQGIYRL
LEIEKIHGFEQTYEFDLRLIRRRAILWTQEHFPAPMSSYMTGLLFGWLDKDFEEMEELYTSLGIIHLFALSGMQVNFFIE
LLRNVLLRLGLSRKLVFFIQIPFSIFYAFLTGLSLSILRALLQKNIPFKNPSDRFSITFLLLIVFSPYFLLTTGGQLTML
YSFLITFISRKFKEVKGLKKSLLDSTVLAVGVLPLLIFHFHSFQPLSIILTLLFSMIFDFLLLPGLLFVFLLSLLGINLT
LLNPFFVVLESVVKLVGNLFDKPIVFGKPNVIFLLLLLLFILSGLVLDFYKKRNWSLVIILVLFCIFFLVKNPKHPSITM
VDVGQGDSILLQDSWNSKNILIDTGGRLKIRTDEHWREGSYKSNAERTLLPYLRARGVSKIDALIVTHPDEDHIGDLKSV
AQKVPIKNIYVSASALEKQIFVKKLSSLKTQIHIVQEGDKIPIFNSYLRFLTTGGEGKSDNDNSLVTFGEFYGKKFLFTG
DLEEEGEVKLQKGYPHLEVDILKVGHHGSKTSTKEGFLEAIKPKVALISAGKNNRYKHPSQETLHQLTARGIKIYRTDQQ
GAIRLLYKKGSWQIQTVK

Nucleotide

• Length: 2217 bp

>NTDB_id=918954 VNN48_RS08860 WP_407281152.1 1816515..1818731(+) (comEC) [Lactococcus formosensis strain PAQ-208]
ATGAAACAAAAATTTTCGCTTATCTATTTAGTTTATCTCTTGGTTTTGGTTTATTTTCTTATTTTTAGTTTTTCGTGGCC
TATCATTGTTTTTAGCCTTTTCAGTATTATTGTTGCTTTATATCGTCAATATTATGGTTTGTTAGCTCTTTTACTATGCT
TTAGCTTGTTCTTACACATGGTTAAAAAAGAAGATGAATTACAAGAAAATAAACAACCAGCAAAGATTTCTAAAATCACA
CCCTACATGGATACTCTTCAAGTGAATGGAAGTAGGCTCAGTTTTAGAGGTGAAGTAGATGGACGAGATTATCAAGCTTT
TTACACGTTGTCTTCTGAAAAAGAGAAAGAATACTTTAAAAATCTTGCCGTAAAGGGGACATTATATCTTGAAGGCACTT
TGGAGATTCCAGAGGGACAGAGAAACTTTACTGGCTTTGATTATAGAAAGTATTTAAGAACTCAAGGTATTTATCGACTT
CTCGAAATAGAAAAAATTCATGGATTTGAACAAACATATGAATTTGACTTACGTCTTATACGCAGAAGAGCTATCCTTTG
GACGCAGGAACATTTTCCAGCACCGATGTCTTCCTATATGACAGGACTTCTGTTTGGTTGGTTAGATAAAGACTTTGAAG
AAATGGAGGAGCTCTACACTAGTCTCGGTATTATCCATTTATTTGCTTTGTCAGGTATGCAAGTGAATTTTTTTATTGAA
CTCCTTCGAAATGTTTTACTAAGACTTGGCTTATCACGAAAGTTAGTCTTTTTTATCCAGATTCCCTTTTCGATATTTTA
TGCATTTCTTACAGGCTTATCTCTTTCAATCTTACGCGCGCTTCTACAAAAAAATATCCCTTTTAAAAATCCAAGCGATA
GATTTTCTATCACTTTTCTTCTTTTAATAGTGTTCAGTCCATATTTTCTACTAACTACAGGGGGACAATTGACGATGCTC
TATTCTTTCTTAATCACGTTCATATCGCGAAAATTCAAAGAAGTGAAAGGACTAAAAAAGTCTTTACTTGATTCTACTGT
TTTAGCTGTAGGAGTCCTTCCGCTTTTGATTTTTCATTTCCATAGTTTTCAGCCATTATCGATAATATTGACTTTATTAT
TCAGTATGATCTTTGATTTTTTACTCTTACCTGGTTTGCTTTTTGTTTTTCTCCTTTCTTTACTTGGTATTAATCTGACA
TTACTTAATCCTTTTTTTGTTGTTTTAGAATCAGTAGTAAAGCTGGTTGGGAATTTATTCGACAAACCAATTGTGTTTGG
AAAACCAAATGTTATATTTTTACTTTTACTTTTACTTTTTATTCTGAGTGGACTTGTACTGGATTTTTATAAAAAAAGAA
ATTGGAGTTTAGTCATAATACTTGTTCTTTTCTGTATTTTTTTCCTGGTTAAGAATCCTAAACACCCAAGTATTACAATG
GTGGATGTGGGACAAGGAGACAGTATTCTCTTGCAGGACAGCTGGAACAGTAAAAATATCCTAATAGATACTGGCGGTAG
ATTAAAGATAAGAACTGATGAGCACTGGAGGGAAGGAAGCTATAAAAGTAATGCGGAGCGTACACTTCTCCCTTATCTGA
GAGCGCGTGGAGTGAGTAAGATAGATGCCCTGATAGTAACACATCCAGATGAAGATCATATTGGAGACTTGAAGAGTGTA
GCTCAGAAAGTACCAATAAAAAATATTTATGTCTCAGCTAGTGCATTAGAGAAGCAAATTTTTGTGAAAAAACTAAGCAG
CTTAAAAACTCAGATTCACATTGTGCAAGAGGGAGACAAGATTCCCATATTTAACAGTTATCTCCGATTTTTAACGACAG
GAGGTGAAGGAAAAAGCGATAATGATAATTCTTTAGTGACATTTGGTGAATTTTATGGGAAGAAATTTCTTTTTACAGGT
GACTTAGAAGAAGAGGGAGAGGTTAAACTCCAGAAAGGATATCCACATTTAGAGGTTGATATCCTAAAAGTTGGACATCA
CGGCAGTAAGACTTCTACAAAGGAAGGTTTTTTAGAAGCGATTAAGCCTAAGGTTGCTCTTATTTCTGCTGGAAAGAATA
ATCGATATAAACATCCGAGTCAAGAGACGCTTCACCAATTAACTGCACGAGGAATAAAAATTTATCGGACAGACCAGCAA
GGAGCGATCCGTCTCCTTTATAAAAAAGGCAGCTGGCAAATTCAAACAGTAAAGTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (203-447)

• Domain of unknown function (DUF4131) (DUF4131) (21-166)

• Metallo-beta-lactamase superfamily (Lactamase_B) (483-691)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC	Lactococcus lactis subsp. cremoris KW2	52.381	99.593	0.522
comEC/celB	Streptococcus mitis SK321	46.123	100	0.467
comEC/celB	Streptococcus mitis NCTC 12261	44.712	100	0.453
comEC/celB	Streptococcus pneumoniae TIGR4	44.37	100	0.449
comEC/celB	Streptococcus pneumoniae Rx1	44.236	100	0.447
comEC/celB	Streptococcus pneumoniae D39	44.236	100	0.447
comEC/celB	Streptococcus pneumoniae R6	44.236	100	0.447