Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OC193_RS15505 Genome accession   NZ_AP025476
Coordinates   3428465..3429577 (-) Length   370 a.a.
NCBI ID   WP_048662688.1    Uniprot ID   -
Organism   Vibrio crassostreae strain LMG 22240     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3423465..3434577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS15475 hemF 3423987..3424904 (-) 918 WP_048657840.1 oxygen-dependent coproporphyrinogen oxidase -
  OC193_RS15480 - 3424925..3425482 (-) 558 WP_048657839.1 L-threonylcarbamoyladenylate synthase -
  OC193_RS15485 purE 3425677..3426162 (+) 486 WP_017073863.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OC193_RS15490 - 3426168..3427298 (+) 1131 WP_048657838.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OC193_RS15495 - 3427404..3427973 (-) 570 WP_004735775.1 type I DNA topoisomerase -
  OC193_RS15500 - 3427986..3428462 (-) 477 WP_048657837.1 DUF494 family protein -
  OC193_RS15505 dprA 3428465..3429577 (-) 1113 WP_048662688.1 DNA-processing protein DprA Machinery gene
  OC193_RS15510 - 3429574..3430665 (-) 1092 WP_048657835.1 LysM peptidoglycan-binding domain-containing protein -
  OC193_RS15515 def 3430806..3431318 (+) 513 WP_048611208.1 peptide deformylase -
  OC193_RS15520 fmt 3431356..3432303 (+) 948 WP_048657834.1 methionyl-tRNA formyltransferase -
  OC193_RS15525 rsmB 3432396..3433676 (+) 1281 WP_048657833.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40068.82 Da        Isoelectric Point: 7.2723

>NTDB_id=91894 OC193_RS15505 WP_048662688.1 3428465..3429577(-) (dprA) [Vibrio crassostreae strain LMG 22240]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQAIGLSAKQISYLRQQAPKEVEACLAWQASQTNHHII
TLNCPHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLAERICENGALISEFRPNAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPNKSENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91894 OC193_RS15505 WP_048662688.1 3428465..3429577(-) (dprA) [Vibrio crassostreae strain LMG 22240]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTTTAAGTTTTGTTCCGCAGTTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGTATTGATTCCCCATCGAATATTGTTGGTTACTCCAGCCAACAGCTGCAAGCGATTGGTTTGTCAGCCAAGCAAATCT
CCTACTTAAGACAGCAAGCCCCTAAAGAAGTGGAGGCTTGCCTGGCGTGGCAAGCGAGTCAGACCAACCATCACATCATT
ACCCTTAATTGTCCTCATTATCCCAAACTGCTGAACGAGACAGCCTCCGCACCAAGTGTGCTTTTCGTTAAAGGTCATGT
TGAAAAACTGATTGAGCCTCAAATCGCGATGGTCGGTAGTCGTAACGCCAGTCTCGAAGGGCTGCAAACTGCGAAGTCCT
TCGCTAAAGAGTTTGTCCAAAACGGCTTGATTGTCACCAGTGGTTTAGCGCTCGGTATCGATGGCTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTGTTGGGCTCTGGCTTGGATTCCATTTATCCTGCGCGACACCGAAATCT
AGCGGAGAGGATCTGTGAAAATGGTGCGTTGATTTCAGAATTCCGCCCAAACGCTAAACCTCGACCTGAACATTTCCCAC
GGCGTAACCGTATTATAAGTGGATTGTCTTTGGGGACTCTCGTCGTTGAGGCGGCCGAGAAAAGCGGTTCTTTGATTACG
GCGCGTTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCGCTTCCCGGTTCGATTCATAACCCAACCAGTCGCGGAGGCAA
CAGTCTAATTAAGGCAGGAGCATGTTTGGTACAGAGCGCTCAAGATGTTCTAATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAACCTACGCCGAACAAGAGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(304-363)

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.293

99.73

0.681
  dprA Vibrio cholerae strain A1552

58.824

100

0.595
  dprA Glaesserella parasuis strain SC1401

48.118

100

0.484
  dprA Legionella pneumophila strain ERS1305867

47.866

88.649

0.424
  dprA Haemophilus influenzae Rd KW20

45.401

91.081

0.414
  dprA Neisseria meningitidis strain C311

37.94

100

0.408
  dprA Neisseria meningitidis MC58

37.94

100

0.408
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.397
  dprA Neisseria gonorrhoeae MS11

37.215

100

0.397

Multiple sequence alignment