Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VNN48_RS06485 Genome accession   NZ_CP141723
Coordinates   1335413..1335907 (-) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus formosensis strain PAQ-208     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1330413..1340907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS06455 (VNN48_06450) - 1330745..1331938 (+) 1194 WP_407280901.1 MFS transporter -
  VNN48_RS06460 (VNN48_06455) recX 1332033..1332866 (+) 834 WP_252175461.1 recombination regulator RecX -
  VNN48_RS06465 (VNN48_06460) - 1332950..1333798 (+) 849 WP_017369518.1 MurR/RpiR family transcriptional regulator -
  VNN48_RS06470 (VNN48_06465) - 1333830..1334138 (+) 309 WP_096368946.1 DUF960 domain-containing protein -
  VNN48_RS06475 (VNN48_06470) - 1334172..1334939 (-) 768 WP_252175462.1 metallophosphoesterase -
  VNN48_RS06480 (VNN48_06475) rpsR 1335048..1335293 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN48_RS06485 (VNN48_06480) ssb 1335413..1335907 (-) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  VNN48_RS06490 (VNN48_06485) rpsF 1335945..1336238 (-) 294 WP_003133129.1 30S ribosomal protein S6 -
  VNN48_RS06495 (VNN48_06490) - 1336424..1336636 (-) 213 WP_016171080.1 hypothetical protein -
  VNN48_RS06500 (VNN48_06495) - 1337111..1338574 (+) 1464 WP_017369522.1 amino acid permease -
  VNN48_RS06505 (VNN48_06500) dnaX 1338599..1340263 (-) 1665 WP_407280907.1 DNA polymerase III subunit gamma/tau -
  VNN48_RS06510 (VNN48_06505) - 1340276..1340896 (-) 621 WP_213432838.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=918931 VNN48_RS06485 WP_017369521.1 1335413..1335907(-) (ssb) [Lactococcus formosensis strain PAQ-208]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=918931 VNN48_RS06485 WP_017369521.1 1335413..1335907(-) (ssb) [Lactococcus formosensis strain PAQ-208]
ATGATTAATAATGTTGTTTTGGTTGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAGCGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTGACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACCGAGGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
TGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCGTTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372