Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VNN39_RS03885 Genome accession   NZ_CP141721
Coordinates   787956..788450 (+) Length   164 a.a.
NCBI ID   WP_165712290.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M04020401 EE5e5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 782956..793450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN39_RS03865 (VNN39_03865) - 782965..783585 (+) 621 WP_338997890.1 hypothetical protein -
  VNN39_RS03870 (VNN39_03870) dnaX 783598..785262 (+) 1665 WP_338997891.1 DNA polymerase III subunit gamma/tau -
  VNN39_RS03875 (VNN39_03875) - 785289..786752 (-) 1464 WP_339007244.1 amino acid permease -
  VNN39_RS03880 (VNN39_03880) rpsF 787625..787918 (+) 294 WP_003133129.1 30S ribosomal protein S6 -
  VNN39_RS03885 (VNN39_03885) ssb 787956..788450 (+) 495 WP_165712290.1 single-stranded DNA-binding protein Machinery gene
  VNN39_RS03890 (VNN39_03890) rpsR 788570..788815 (+) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN39_RS03895 (VNN39_03895) - 788924..789691 (+) 768 WP_338997892.1 metallophosphoesterase -
  VNN39_RS03900 (VNN39_03900) - 789725..790033 (-) 309 WP_096368946.1 DUF960 domain-containing protein -
  VNN39_RS03905 (VNN39_03905) - 790065..790913 (-) 849 WP_017369518.1 MurR/RpiR family transcriptional regulator -
  VNN39_RS03910 (VNN39_03910) recX 790997..791830 (-) 834 WP_165712284.1 recombination regulator RecX -
  VNN39_RS03915 (VNN39_03915) - 791924..793117 (-) 1194 WP_338997893.1 MFS transporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18045.96 Da        Isoelectric Point: 4.9533

>NTDB_id=918902 VNN39_RS03885 WP_165712290.1 787956..788450(+) (ssb) [Lactococcus formosensis strain M04020401 EE5e5]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGLPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=918902 VNN39_RS03885 WP_165712290.1 787956..788450(+) (ssb) [Lactococcus formosensis strain M04020401 EE5e5]
ATGATTAATAATGTTGTTTTGGTTGGACGCGTCGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAGCGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTACGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAGGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
TGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGCAATTCAACACCTGATTTTGGTCGTGATGCAGATCCGTTTGGTGGCTTACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372