Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VNN53_RS04080 Genome accession   NZ_CP141720
Coordinates   822891..823385 (+) Length   164 a.a.
NCBI ID   WP_003133131.1    Uniprot ID   A0A1I4HNK8
Organism   Lactococcus garvieae strain CAHFS22OV20.5B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 817891..828385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN53_RS04055 (VNN53_04055) - 817904..818524 (+) 621 WP_338962791.1 hypothetical protein -
  VNN53_RS04060 (VNN53_04060) dnaX 818537..820195 (+) 1659 WP_338962794.1 DNA polymerase III subunit gamma/tau -
  VNN53_RS04065 (VNN53_04065) - 820229..821692 (-) 1464 WP_003133128.1 amino acid permease -
  VNN53_RS04070 (VNN53_04070) - 822161..822373 (+) 213 WP_016171080.1 hypothetical protein -
  VNN53_RS04075 (VNN53_04075) rpsF 822560..822853 (+) 294 WP_003133129.1 30S ribosomal protein S6 -
  VNN53_RS04080 (VNN53_04080) ssb 822891..823385 (+) 495 WP_003133131.1 single-stranded DNA-binding protein Machinery gene
  VNN53_RS04085 (VNN53_04085) rpsR 823499..823744 (+) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN53_RS04090 (VNN53_04090) - 824103..824870 (+) 768 WP_338962801.1 metallophosphoesterase -
  VNN53_RS04095 (VNN53_04095) - 824904..825212 (-) 309 WP_014025499.1 DUF960 domain-containing protein -
  VNN53_RS04100 (VNN53_04100) - 825244..826092 (-) 849 WP_003133137.1 MurR/RpiR family transcriptional regulator -
  VNN53_RS04105 (VNN53_04105) recX 826175..827008 (-) 834 WP_338962806.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18003.88 Da        Isoelectric Point: 4.9533

>NTDB_id=918856 VNN53_RS04080 WP_003133131.1 822891..823385(+) (ssb) [Lactococcus garvieae strain CAHFS22OV20.5B5]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNATPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=918856 VNN53_RS04080 WP_003133131.1 822891..823385(+) (ssb) [Lactococcus garvieae strain CAHFS22OV20.5B5]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATATACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGCATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAGAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATGCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I4HNK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.598
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.933

100

0.585
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372