Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | VNN32_RS03540 | Genome accession | NZ_CP141703 |
| Coordinates | 659662..660156 (-) | Length | 164 a.a. |
| NCBI ID | WP_017369521.1 | Uniprot ID | A0A9Q9D6U2 |
| Organism | Lactococcus petauri strain R21-74 AL-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 641863..665140 | 659662..660156 | within | 0 |
Gene organization within MGE regions
Location: 641863..665140
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNN32_RS03390 (VNN32_03390) | - | 641863..642186 (-) | 324 | WP_338976297.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| VNN32_RS03395 (VNN32_03395) | - | 642252..642422 (-) | 171 | WP_338976146.1 | hypothetical protein | - |
| VNN32_RS03400 (VNN32_03400) | - | 642645..642923 (-) | 279 | WP_338976144.1 | hypothetical protein | - |
| VNN32_RS03405 (VNN32_03405) | - | 642931..643287 (-) | 357 | WP_338976221.1 | hypothetical protein | - |
| VNN32_RS03410 (VNN32_03410) | - | 643287..643808 (-) | 522 | WP_338976223.1 | hypothetical protein | - |
| VNN32_RS03415 (VNN32_03415) | - | 644001..644180 (-) | 180 | WP_014025437.1 | hypothetical protein | - |
| VNN32_RS03420 (VNN32_03420) | - | 644237..644749 (-) | 513 | WP_338976225.1 | hypothetical protein | - |
| VNN32_RS03425 (VNN32_03425) | - | 645233..646948 (-) | 1716 | WP_338976299.1 | hypothetical protein | - |
| VNN32_RS03430 (VNN32_03430) | - | 646945..647274 (-) | 330 | WP_003133226.1 | HTH domain-containing protein | - |
| VNN32_RS03435 (VNN32_03435) | - | 647271..647462 (-) | 192 | WP_017371269.1 | hypothetical protein | - |
| VNN32_RS03440 (VNN32_03440) | - | 647660..647941 (-) | 282 | WP_003133227.1 | hypothetical protein | - |
| VNN32_RS03445 (VNN32_03445) | - | 647925..648089 (-) | 165 | WP_014025432.1 | hypothetical protein | - |
| VNN32_RS03450 (VNN32_03450) | - | 648235..648417 (-) | 183 | WP_311842852.1 | DUF1655 domain-containing protein | - |
| VNN32_RS03455 (VNN32_03455) | - | 648417..648710 (-) | 294 | WP_338976301.1 | hypothetical protein | - |
| VNN32_RS03460 (VNN32_03460) | - | 648813..649073 (-) | 261 | WP_338976303.1 | hypothetical protein | - |
| VNN32_RS03465 (VNN32_03465) | - | 649116..649322 (-) | 207 | WP_004259899.1 | XRE family transcriptional regulator | - |
| VNN32_RS03470 (VNN32_03470) | - | 649615..650004 (+) | 390 | WP_338976305.1 | helix-turn-helix domain-containing protein | - |
| VNN32_RS03475 (VNN32_03475) | - | 650014..650568 (+) | 555 | WP_338976307.1 | hypothetical protein | - |
| VNN32_RS03480 (VNN32_03480) | - | 650568..650750 (+) | 183 | WP_338976309.1 | hypothetical protein | - |
| VNN32_RS03490 (VNN32_03490) | - | 651856..653040 (+) | 1185 | WP_338976311.1 | site-specific integrase | - |
| VNN32_RS03495 (VNN32_03495) | - | 653252..653644 (-) | 393 | WP_019335765.1 | VOC family protein | - |
| VNN32_RS03500 (VNN32_03500) | - | 653653..654030 (-) | 378 | WP_019335764.1 | helix-turn-helix domain-containing protein | - |
| VNN32_RS03505 (VNN32_03505) | - | 654172..654990 (+) | 819 | WP_046401025.1 | aldo/keto reductase | - |
| VNN32_RS03510 (VNN32_03510) | - | 655037..656188 (+) | 1152 | WP_338976316.1 | MFS transporter | - |
| VNN32_RS03515 (VNN32_03515) | recX | 656283..657116 (+) | 834 | WP_046401051.1 | recombination regulator RecX | - |
| VNN32_RS03520 (VNN32_03520) | - | 657199..658047 (+) | 849 | WP_019291952.1 | MurR/RpiR family transcriptional regulator | - |
| VNN32_RS03525 (VNN32_03525) | - | 658079..658387 (+) | 309 | WP_019291953.1 | DUF960 domain-containing protein | - |
| VNN32_RS03530 (VNN32_03530) | - | 658421..659188 (-) | 768 | WP_046401027.1 | metallophosphoesterase | - |
| VNN32_RS03535 (VNN32_03535) | rpsR | 659297..659542 (-) | 246 | WP_003133134.1 | 30S ribosomal protein S18 | - |
| VNN32_RS03540 (VNN32_03540) | ssb | 659662..660156 (-) | 495 | WP_017369521.1 | single-stranded DNA-binding protein | Machinery gene |
| VNN32_RS03545 (VNN32_03545) | rpsF | 660194..660487 (-) | 294 | WP_046401028.1 | 30S ribosomal protein S6 | - |
| VNN32_RS03550 (VNN32_03550) | - | 660673..660885 (-) | 213 | WP_019291955.1 | hypothetical protein | - |
| VNN32_RS03555 (VNN32_03555) | - | 661352..662815 (+) | 1464 | WP_019291956.1 | amino acid permease | - |
| VNN32_RS03560 (VNN32_03560) | dnaX | 662849..664507 (-) | 1659 | WP_019335759.1 | DNA polymerase III subunit gamma/tau | - |
| VNN32_RS03565 (VNN32_03565) | - | 664520..665140 (-) | 621 | WP_046401029.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18019.88 Da Isoelectric Point: 4.9533
>NTDB_id=918572 VNN32_RS03540 WP_017369521.1 659662..660156(-) (ssb) [Lactococcus petauri strain R21-74 AL-1]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=918572 VNN32_RS03540 WP_017369521.1 659662..660156(-) (ssb) [Lactococcus petauri strain R21-74 AL-1]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAAAACAAAGAAGGTCAACGTGTTTACGTGACCGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGTCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAAAACAAAGAAGGTCAACGTGTTTACGTGACCGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.725 |
100 |
0.591 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.494 |
100 |
0.591 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.242 |
80.488 |
0.396 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.485 |
80.488 |
0.39 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.485 |
80.488 |
0.39 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.485 |
80.488 |
0.39 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
48.485 |
80.488 |
0.39 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.485 |
80.488 |
0.39 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
64.634 |
0.372 |