Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VNN27_RS04005 Genome accession   NZ_CP141700
Coordinates   810680..811174 (+) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus petauri strain R22-25 IC35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 805680..816174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN27_RS03980 (VNN27_03980) - 805696..806316 (+) 621 WP_173817231.1 hypothetical protein -
  VNN27_RS03985 (VNN27_03985) dnaX 806329..807987 (+) 1659 WP_346350170.1 DNA polymerase III subunit gamma/tau -
  VNN27_RS03990 (VNN27_03990) - 808021..809484 (-) 1464 WP_019291956.1 amino acid permease -
  VNN27_RS03995 (VNN27_03995) - 809951..810163 (+) 213 WP_019291955.1 hypothetical protein -
  VNN27_RS04000 (VNN27_04000) rpsF 810349..810642 (+) 294 WP_003133129.1 30S ribosomal protein S6 -
  VNN27_RS04005 (VNN27_04005) ssb 810680..811174 (+) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  VNN27_RS04010 (VNN27_04010) rpsR 811294..811539 (+) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN27_RS04015 (VNN27_04015) - 811648..812415 (+) 768 WP_346350171.1 metallophosphoesterase -
  VNN27_RS04020 (VNN27_04020) - 812449..812757 (-) 309 WP_346350172.1 DUF960 domain-containing protein -
  VNN27_RS04025 (VNN27_04025) - 812789..813637 (-) 849 WP_019291952.1 MurR/RpiR family transcriptional regulator -
  VNN27_RS04030 (VNN27_04030) recX 813720..814553 (-) 834 WP_346350173.1 recombination regulator RecX -
  VNN27_RS04035 (VNN27_04035) - 814677..815858 (-) 1182 WP_019291950.1 MFS transporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=918498 VNN27_RS04005 WP_017369521.1 810680..811174(+) (ssb) [Lactococcus petauri strain R22-25 IC35]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=918498 VNN27_RS04005 WP_017369521.1 810680..811174(+) (ssb) [Lactococcus petauri strain R22-25 IC35]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCGATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372