Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VNN38_RS04045 Genome accession   NZ_CP141697
Coordinates   813277..813771 (+) Length   164 a.a.
NCBI ID   WP_019293315.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-77-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 808277..818771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN38_RS04020 (VNN38_04020) - 808293..808913 (+) 621 WP_003133126.1 hypothetical protein -
  VNN38_RS04025 (VNN38_04025) dnaX 808926..810584 (+) 1659 WP_019293316.1 DNA polymerase III subunit gamma/tau -
  VNN38_RS04030 (VNN38_04030) - 810618..812081 (-) 1464 WP_019291956.1 amino acid permease -
  VNN38_RS04035 (VNN38_04035) - 812548..812760 (+) 213 WP_019291955.1 hypothetical protein -
  VNN38_RS04040 (VNN38_04040) rpsF 812946..813239 (+) 294 WP_003133129.1 30S ribosomal protein S6 -
  VNN38_RS04045 (VNN38_04045) ssb 813277..813771 (+) 495 WP_019293315.1 single-stranded DNA-binding protein Machinery gene
  VNN38_RS04050 (VNN38_04050) rpsR 813891..814136 (+) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN38_RS04055 (VNN38_04055) - 814245..815012 (+) 768 WP_019293314.1 metallophosphoesterase -
  VNN38_RS04060 (VNN38_04060) - 815046..815354 (-) 309 WP_019291953.1 DUF960 domain-containing protein -
  VNN38_RS04065 (VNN38_04065) - 815386..816234 (-) 849 WP_019291952.1 MurR/RpiR family transcriptional regulator -
  VNN38_RS04070 (VNN38_04070) recX 816317..817150 (-) 834 WP_019293313.1 recombination regulator RecX -
  VNN38_RS04075 (VNN38_04075) - 817273..818454 (-) 1182 WP_019293312.1 MFS transporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18020.87 Da        Isoelectric Point: 4.7815

>NTDB_id=918363 VNN38_RS04045 WP_019293315.1 813277..813771(+) (ssb) [Lactococcus petauri strain R21-77-2]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQEQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=918363 VNN38_RS04045 WP_019293315.1 813277..813771(+) (ssb) [Lactococcus petauri strain R21-77-2]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAAAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGGAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372