Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABZO29_RS00715 Genome accession   NZ_CP160403
Coordinates   128733..129395 (-) Length   220 a.a.
NCBI ID   WP_367318169.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 123733..134395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS00695 (ABZO29_00695) - 123860..124361 (-) 502 Protein_137 ISAzo13 family transposase -
  ABZO29_RS00700 (ABZO29_00700) - 124572..126182 (+) 1611 WP_367318166.1 flavin monoamine oxidase family protein -
  ABZO29_RS00705 (ABZO29_00705) - 126179..126820 (+) 642 WP_367318167.1 Rid family hydrolase -
  ABZO29_RS00710 (ABZO29_00710) - 127137..128321 (+) 1185 WP_367318168.1 IS701 family transposase -
  ABZO29_RS00715 (ABZO29_00715) vraR 128733..129395 (-) 663 WP_367318169.1 response regulator Regulator
  ABZO29_RS00720 (ABZO29_00720) - 129370..130542 (-) 1173 WP_367318170.1 sensor histidine kinase -
  ABZO29_RS00725 (ABZO29_00725) - 130718..132997 (+) 2280 WP_367318171.1 MMPL family transporter -
  ABZO29_RS00730 (ABZO29_00730) - 133067..133198 (-) 132 WP_367326416.1 hypothetical protein -
  ABZO29_RS00735 (ABZO29_00735) - 133491..134348 (+) 858 WP_367318172.1 recombinase family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23454.19 Da        Isoelectric Point: 5.0710

>NTDB_id=918315 ABZO29_RS00715 WP_367318169.1 128733..129395(-) (vraR) [Streptomyces sp. HUAS ZL42]
MSIRVLVADDQTIIRTGLRIMLNAQPGIEVVGEAADGQEAVRLARELRPDVCLFDIRMPVIDGLEATRLIAGPGVADPLA
VVVITTFDLDEYVYGSLRAGARGFLLKDTGPDLLAQAVRSASDGEALIAPSVTVRLLQAFADLPAGRPAAQPVSPVTARE
EQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYETRRILPGT

Nucleotide


Download         Length: 663 bp        

>NTDB_id=918315 ABZO29_RS00715 WP_367318169.1 128733..129395(-) (vraR) [Streptomyces sp. HUAS ZL42]
TTGTCCATTCGCGTCCTCGTCGCTGACGACCAGACCATCATCCGCACCGGGCTGCGGATCATGCTGAACGCCCAGCCCGG
CATCGAGGTGGTCGGCGAGGCCGCCGACGGACAGGAAGCGGTACGCCTGGCCCGCGAACTGCGCCCCGACGTCTGCCTGT
TCGACATCCGCATGCCCGTGATCGACGGACTCGAGGCCACCCGGCTGATCGCCGGCCCGGGCGTCGCCGACCCGCTGGCC
GTGGTCGTCATCACCACGTTCGACCTCGACGAGTACGTCTACGGCTCACTGCGTGCCGGCGCCCGCGGATTCCTCCTCAA
AGACACGGGACCAGACCTTCTGGCCCAGGCCGTACGGTCGGCGTCCGACGGTGAGGCGCTCATCGCGCCCAGCGTCACCG
TCCGTCTGCTCCAGGCATTCGCGGACCTGCCCGCCGGCCGGCCCGCGGCCCAGCCGGTCTCCCCCGTCACCGCCCGCGAG
GAGCAGGTGCTCCTCGCCGTCGCTCGCGGGCTGACCAACACCGAGATCGCCGATGCGCTGCACATCAGCCTCAGCACGGT
GAAGACGCATCTGGCCAGCCTGATGGCCAAACTCGGCGCCCGCAACCGGGTCGAGATCGCGATGTGGGCCTACGAGACGC
GCCGTATCCTCCCCGGAACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

98.182

0.368