Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ABXJ52_RS12560 Genome accession   NZ_CP160402
Coordinates   2718498..2719103 (-) Length   201 a.a.
NCBI ID   WP_367049010.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713498..2724103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS12540 (ABXJ52_12540) - 2714228..2715199 (+) 972 WP_367041878.1 hypothetical protein -
  ABXJ52_RS12545 (ABXJ52_12545) - 2715316..2716227 (+) 912 WP_367041880.1 hypothetical protein -
  ABXJ52_RS12550 (ABXJ52_12550) clpX 2716314..2717600 (-) 1287 WP_367041882.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ABXJ52_RS12555 (ABXJ52_12555) clpP 2717756..2718436 (-) 681 WP_367041884.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABXJ52_RS12560 (ABXJ52_12560) clpP 2718498..2719103 (-) 606 WP_367049010.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ABXJ52_RS12565 (ABXJ52_12565) tig 2719513..2720886 (-) 1374 WP_367041886.1 trigger factor -
  ABXJ52_RS12580 (ABXJ52_12580) - 2721419..2721613 (-) 195 WP_160505028.1 hypothetical protein -
  ABXJ52_RS12585 (ABXJ52_12585) - 2722254..2723516 (+) 1263 WP_367041889.1 acyltransferase family protein -
  ABXJ52_RS12590 (ABXJ52_12590) - 2723513..2723974 (-) 462 WP_367041890.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21296.21 Da        Isoelectric Point: 4.4496

>NTDB_id=918258 ABXJ52_RS12560 WP_367049010.1 2718498..2719103(-) (clpP) [Streptomyces sp. Je 1-332]
MPSAAGDPSIGGGLGDQVYNRLLNERIIFLGQAVDDDIANKITAQLLLLAAEPDKDIFLYINSPGGSITAGMAIYDTMQY
IQNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLLTKKKMADLTAFHTGQTVE
QVTRDSDRDRWFDPQEAKEYGLIDDIMPNAASMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=918258 ABXJ52_RS12560 WP_367049010.1 2718498..2719103(-) (clpP) [Streptomyces sp. Je 1-332]
ATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGGCCGTGGACGACGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCTGAGCCGG
ACAAGGACATCTTCCTTTACATCAACAGCCCTGGTGGATCCATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCCAGAACGACGTGGTGACGATCGCGATGGGCATGGCGGCCTCCATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCCGGACTCGCGGGCTCCGCGTCGGACATCA
AGATCCACGCCGAGCGCCTCCTTCTCACGAAGAAGAAGATGGCTGATCTCACCGCGTTCCACACGGGCCAGACCGTCGAG
CAGGTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACCCGCAGGAGGCCAAGGAGTACGGCCTCATCGACGACATCAT
GCCCAACGCGGCCAGCATGCCGGGCGGCGGCGGCACCGGAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.538

86.07

0.512
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.598

86.567

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

53.143

87.065

0.463
  clpP Streptococcus mutans UA159

53.143

87.065

0.463
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.571

87.065

0.458
  clpP Streptococcus thermophilus LMG 18311

52

87.065

0.453
  clpP Streptococcus thermophilus LMD-9

52

87.065

0.453
  clpP Streptococcus pneumoniae Rx1

51.429

87.065

0.448
  clpP Streptococcus pneumoniae D39

51.429

87.065

0.448
  clpP Streptococcus pneumoniae R6

51.429

87.065

0.448
  clpP Streptococcus pneumoniae TIGR4

51.429

87.065

0.448
  clpP Streptococcus pyogenes JRS4

50.286

87.065

0.438
  clpP Streptococcus pyogenes MGAS315

50.286

87.065

0.438