Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   VNN42_RS06145 Genome accession   NZ_CP141691
Coordinates   1242258..1243301 (-) Length   347 a.a.
NCBI ID   WP_019293303.1    Uniprot ID   A0A139M7M7
Organism   Lactococcus petauri strain UCD-BR1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237258..1248301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN42_RS06130 (VNN42_06130) rpsB 1237291..1238064 (-) 774 WP_003133158.1 30S ribosomal protein S2 -
  VNN42_RS06135 (VNN42_06135) - 1238337..1239377 (+) 1041 WP_019291938.1 lactonase family protein -
  VNN42_RS06140 (VNN42_06140) adhE 1239533..1242226 (+) 2694 WP_338953166.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  VNN42_RS06145 (VNN42_06145) sepM 1242258..1243301 (-) 1044 WP_019293303.1 SepM family pheromone-processing serine protease Regulator
  VNN42_RS06150 (VNN42_06150) coaD 1243291..1243788 (-) 498 WP_019291941.1 pantetheine-phosphate adenylyltransferase -
  VNN42_RS06155 (VNN42_06155) rsmD 1243778..1244317 (-) 540 WP_061414970.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  VNN42_RS06160 (VNN42_06160) - 1244416..1245762 (-) 1347 WP_003133148.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37788.09 Da        Isoelectric Point: 7.4074

>NTDB_id=918258 VNN42_RS06145 WP_019293303.1 1242258..1243301(-) (sepM) [Lactococcus petauri strain UCD-BR1]
MKNEKIKKHKKLKLFFAIALPLLIVVGLFFPLPYYIEQPGGTIPVNQMVDVAGKKDEHKGNFYLTTVEMVRANAASMLYS
KSNSFATVVSSEEMTGGMTNQQFDLVNQFYMQTAQNTAIYQAFKLAGKPYEMKYQGVYVLSITEDSTFKNDLQLSDTITA
VNGHTFKSSTEMIDYVSQQKVGDSVTIKYTRVDGSNHEATGKYIKLSNGKTGIGIGLVDHTQVVTDPKVKIDAGSIGGPS
AGMMFTLEIYSQITGKDLRQGREIAGTGTINEDGSIGQIGGVDKKVATASNAGAKIFLCPDETEEQTKASGTTNNYTDAL
AAAKKLNTDMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=918258 VNN42_RS06145 WP_019293303.1 1242258..1243301(-) (sepM) [Lactococcus petauri strain UCD-BR1]
ATGAAAAATGAAAAAATAAAAAAGCATAAAAAACTAAAGCTATTCTTTGCCATCGCGCTACCGCTTCTTATTGTAGTGGG
TTTATTCTTCCCCTTACCTTACTATATCGAGCAGCCAGGAGGAACCATTCCAGTTAACCAAATGGTTGATGTTGCAGGGA
AAAAAGACGAACATAAAGGCAACTTTTATTTAACGACAGTTGAAATGGTTCGCGCCAATGCAGCAAGTATGCTTTATTCC
AAGTCGAACTCTTTTGCCACTGTTGTGAGTAGTGAAGAGATGACGGGTGGAATGACCAATCAGCAATTTGACTTGGTCAA
CCAGTTTTATATGCAGACAGCGCAAAACACGGCTATTTATCAGGCCTTTAAGTTGGCAGGGAAACCTTATGAGATGAAGT
ATCAAGGTGTTTATGTTTTGAGCATCACTGAGGATTCAACCTTTAAAAATGACTTACAACTTTCAGATACGATAACGGCA
GTTAATGGACATACTTTCAAATCTTCAACTGAGATGATTGATTATGTATCGCAACAAAAAGTTGGGGATAGCGTTACCAT
CAAATATACACGTGTGGATGGCAGTAATCATGAAGCCACAGGTAAGTACATTAAGTTGAGTAATGGTAAAACAGGGATTG
GTATTGGTTTAGTAGATCATACCCAGGTTGTGACAGACCCTAAAGTTAAAATCGATGCTGGAAGTATTGGCGGGCCAAGT
GCTGGTATGATGTTTACCTTGGAAATATATAGCCAAATCACAGGCAAAGATTTACGTCAAGGACGCGAAATTGCAGGTAC
TGGAACGATCAATGAGGATGGCAGCATCGGGCAAATAGGTGGCGTTGATAAAAAAGTTGCTACAGCAAGTAATGCGGGCG
CAAAAATTTTCCTTTGCCCAGATGAAACGGAAGAACAGACAAAGGCTTCTGGTACAACAAATAACTACACAGATGCGCTT
GCGGCAGCTAAAAAGTTGAATACAGATATGAAAATTGTACCTGTAAAGACGATTCAAGATGCGCTAGATTATCTCGAAAA
ATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(229-308)

PDZ domain (PDZ_2)

(134-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139M7M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.991

100

0.49