Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VNN35_RS06240 Genome accession   NZ_CP141687
Coordinates   1258718..1259212 (-) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus petauri strain UCD-JR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1253718..1264212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN35_RS06210 (VNN35_06210) - 1254034..1255215 (+) 1182 WP_019291950.1 MFS transporter -
  VNN35_RS06215 (VNN35_06215) recX 1255339..1256172 (+) 834 WP_019293313.1 recombination regulator RecX -
  VNN35_RS06220 (VNN35_06220) - 1256255..1257103 (+) 849 WP_019291952.1 MurR/RpiR family transcriptional regulator -
  VNN35_RS06225 (VNN35_06225) - 1257135..1257443 (+) 309 WP_019291953.1 DUF960 domain-containing protein -
  VNN35_RS06230 (VNN35_06230) - 1257477..1258244 (-) 768 WP_040087034.1 metallophosphoesterase -
  VNN35_RS06235 (VNN35_06235) rpsR 1258353..1258598 (-) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN35_RS06240 (VNN35_06240) ssb 1258718..1259212 (-) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  VNN35_RS06245 (VNN35_06245) rpsF 1259250..1259543 (-) 294 WP_173817229.1 30S ribosomal protein S6 -
  VNN35_RS06250 (VNN35_06250) - 1259729..1259941 (-) 213 WP_019291955.1 hypothetical protein -
  VNN35_RS06255 (VNN35_06255) - 1260408..1261871 (+) 1464 WP_019291956.1 amino acid permease -
  VNN35_RS06260 (VNN35_06260) dnaX 1261903..1263561 (-) 1659 WP_285123961.1 DNA polymerase III subunit gamma/tau -
  VNN35_RS06265 (VNN35_06265) - 1263574..1264194 (-) 621 WP_173817231.1 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=918080 VNN35_RS06240 WP_017369521.1 1258718..1259212(-) (ssb) [Lactococcus petauri strain UCD-JR1]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=918080 VNN35_RS06240 WP_017369521.1 1258718..1259212(-) (ssb) [Lactococcus petauri strain UCD-JR1]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372