Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VNN43_RS04270 Genome accession   NZ_CP141685
Coordinates   854888..855382 (+) Length   164 a.a.
NCBI ID   WP_017369521.1    Uniprot ID   A0A9Q9D6U2
Organism   Lactococcus petauri strain R21-69 HC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 849888..860382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN43_RS04245 (VNN43_04245) - 849906..850526 (+) 621 WP_173817231.1 hypothetical protein -
  VNN43_RS04250 (VNN43_04250) dnaX 850539..852197 (+) 1659 WP_285123961.1 DNA polymerase III subunit gamma/tau -
  VNN43_RS04255 (VNN43_04255) - 852229..853692 (-) 1464 WP_019291956.1 amino acid permease -
  VNN43_RS04260 (VNN43_04260) - 854159..854371 (+) 213 WP_019291955.1 hypothetical protein -
  VNN43_RS04265 (VNN43_04265) rpsF 854557..854850 (+) 294 WP_173817229.1 30S ribosomal protein S6 -
  VNN43_RS04270 (VNN43_04270) ssb 854888..855382 (+) 495 WP_017369521.1 single-stranded DNA-binding protein Machinery gene
  VNN43_RS04275 (VNN43_04275) rpsR 855502..855747 (+) 246 WP_003133134.1 30S ribosomal protein S18 -
  VNN43_RS04280 (VNN43_04280) - 855856..856623 (+) 768 WP_040087034.1 metallophosphoesterase -
  VNN43_RS04285 (VNN43_04285) - 856657..856965 (-) 309 WP_019291953.1 DUF960 domain-containing protein -
  VNN43_RS04290 (VNN43_04290) - 856997..857845 (-) 849 WP_019291952.1 MurR/RpiR family transcriptional regulator -
  VNN43_RS04295 (VNN43_04295) recX 857928..858761 (-) 834 WP_019293313.1 recombination regulator RecX -
  VNN43_RS04300 (VNN43_04300) - 858885..860066 (-) 1182 WP_019291950.1 MFS transporter -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18019.88 Da        Isoelectric Point: 4.9533

>NTDB_id=918004 VNN43_RS04270 WP_017369521.1 854888..855382(+) (ssb) [Lactococcus petauri strain R21-69 HC]
MINNVVLVGRVVRDPELRYTPQNTAVATFTIAVNRRFKNAQGEREADFINCVIWRQSAENLANWAKKGALIGVTGSIQVR
NYENKEGQRVYVTEVLADNFQMLESRAAREGGSGSYSAPQQQQSQNRPFAGSNSSAGNSTPDFGRDADPFGGSPMEISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=918004 VNN43_RS04270 WP_017369521.1 854888..855382(+) (ssb) [Lactococcus petauri strain R21-69 HC]
ATGATTAATAATGTTGTTTTGGTCGGACGCGTTGTGCGTGACCCTGAACTGCGATACACACCGCAAAATACTGCGGTTGC
TACATTTACGATTGCTGTTAACCGTCGTTTTAAAAACGCGCAAGGCGAACGTGAAGCTGATTTCATTAACTGTGTCATCT
GGCGCCAATCTGCTGAAAACTTGGCAAATTGGGCTAAAAAAGGTGCCTTGATTGGTGTAACAGGTAGTATTCAAGTGCGA
AATTATGAGAACAAAGAAGGTCAACGTGTTTACGTGACTGAAGTATTGGCTGATAACTTCCAAATGCTTGAAAGTCGTGC
CGCACGTGAAGGTGGCTCTGGTTCATATTCTGCACCACAGCAACAACAATCACAAAATCGTCCTTTTGCTGGCTCTAACA
GCTCAGCAGGAAATTCAACACCTGATTTTGGTCGTGATGCAGATCCATTTGGTGGCTCACCAATGGAAATCTCAGATGAT
GATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.494

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.242

80.488

0.396
  ssbB/cilA Streptococcus pneumoniae D39

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae R6

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis SK321

48.485

80.488

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.485

80.488

0.39
  ssbB/cilA Streptococcus pneumoniae Rx1

48.485

80.488

0.39
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

64.634

0.372