Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV52_RS15585 Genome accession   NZ_AP025465
Coordinates   3364070..3365182 (-) Length   370 a.a.
NCBI ID   WP_137407550.1    Uniprot ID   A0A7V7TGP7
Organism   Vibrio chagasii strain LMG 21353     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3359070..3370182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS15555 hemF 3359620..3360537 (-) 918 WP_137407547.1 oxygen-dependent coproporphyrinogen oxidase -
  OCV52_RS15560 - 3360558..3361115 (-) 558 WP_102425851.1 L-threonylcarbamoyladenylate synthase -
  OCV52_RS15565 purE 3361311..3361796 (+) 486 WP_137407548.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV52_RS15570 - 3361802..3362932 (+) 1131 WP_102425850.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV52_RS15575 - 3363009..3363578 (-) 570 WP_137407549.1 type I DNA topoisomerase -
  OCV52_RS15580 - 3363591..3364067 (-) 477 WP_029235095.1 DUF494 family protein -
  OCV52_RS15585 dprA 3364070..3365182 (-) 1113 WP_137407550.1 DNA-processing protein DprA Machinery gene
  OCV52_RS15590 - 3365179..3366264 (-) 1086 WP_137407551.1 LysM peptidoglycan-binding domain-containing protein -
  OCV52_RS15595 def 3366394..3366909 (+) 516 WP_004739338.1 peptide deformylase -
  OCV52_RS15600 fmt 3366945..3367892 (+) 948 WP_137407552.1 methionyl-tRNA formyltransferase -
  OCV52_RS15605 rsmB 3367982..3369262 (+) 1281 WP_060983483.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39972.93 Da        Isoelectric Point: 7.0589

>NTDB_id=91758 OCV52_RS15585 WP_137407550.1 3364070..3365182(-) (dprA) [Vibrio chagasii strain LMG 21353]
MNEQQLIAWLTLSFIPQLGGKRLARLLSVDSPLNIVGYSGQQLQALGLSTKQIAYLRDQAPREVEACLAWQAKQSNHHIL
TPSCLHYPKLLSEIASAPTVLFVKGNVEKLIEPQIAMVGSRNASIEGLQTTKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALEKGGETFAVLGSGLDSIYPARHRNLAARICESGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVIEAAEKSGSLIT
ARYALEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQSAQDVLVEIKSLLDWSIDQQPNLFEPAPSLEENEQLPFPHLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=91758 OCV52_RS15585 WP_137407550.1 3364070..3365182(-) (dprA) [Vibrio chagasii strain LMG 21353]
GTGAATGAACAGCAATTGATCGCTTGGTTAACGTTAAGCTTTATTCCGCAACTGGGTGGAAAGCGTCTTGCTCGCCTACT
GAGTGTTGATTCTCCTTTAAACATTGTTGGTTACTCAGGGCAACAGCTGCAGGCATTGGGCTTATCAACTAAACAAATCG
CTTATCTACGAGATCAAGCCCCAAGAGAGGTAGAGGCTTGTCTCGCTTGGCAGGCTAAACAATCCAACCATCACATCCTT
ACTCCGAGTTGCCTACACTATCCTAAATTGTTGAGTGAGATAGCTTCAGCACCCACAGTGCTTTTCGTCAAAGGTAATGT
TGAAAAGCTGATAGAGCCTCAAATTGCTATGGTCGGCAGCCGTAATGCCAGCATCGAAGGCTTACAGACTACGAAATCAT
TTGCCAAAGAGTTTGTACAAAATGGCTTGATTGTCACCAGCGGTTTAGCCTTAGGTATCGATGGCTATGCTCATGATGGT
GCGTTAGAAAAAGGAGGCGAAACCTTTGCTGTGCTAGGGTCTGGCTTGGATTCTATTTATCCTGCGAGACACAGAAACCT
CGCGGCTAGGATATGTGAAAGTGGGGCGCTAATCTCAGAGTTTCGTCCAAGTGCCAAACCGCGACCTGAACATTTCCCGC
GTCGCAATCGTATTATTAGTGGCTTATCGTTAGGAACCTTGGTGATCGAGGCTGCAGAGAAGAGTGGTTCACTAATTACC
GCTCGCTACGCTTTGGAGCAAGGGCGTGAAGTATTCGCGCTTCCAGGCTCTATCCATAGCCCAACGAGTCGTGGAGGCAA
TAGCTTAATCAAAGCTGGTGCTTGCTTGGTACAGAGTGCTCAAGATGTCTTGGTTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGACCAACAGCCTAATTTATTCGAACCTGCGCCAAGCTTGGAGGAAAATGAACAATTGCCATTTCCACATCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAAGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)

DprA winged helix domain (DprA_WH)

(304-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7TGP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

57.487

100

0.581
  dprA Glaesserella parasuis strain SC1401

47.978

100

0.481
  dprA Legionella pneumophila strain ERS1305867

44.414

99.189

0.441
  dprA Neisseria meningitidis MC58

38.035

100

0.408
  dprA Neisseria meningitidis strain C311

38.035

100

0.408
  dprA Haemophilus influenzae Rd KW20

43.713

90.27

0.395
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.395
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.395

Multiple sequence alignment