Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QZD84_RS13495 Genome accession   NZ_CP141290
Coordinates   2873997..2874401 (+) Length   134 a.a.
NCBI ID   WP_015297250.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2868997..2879401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS13480 pdhR 2871030..2871797 (-) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  QZD84_RS13485 ampD 2872203..2872754 (-) 552 WP_005484832.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QZD84_RS13490 nadC 2872847..2873734 (+) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QZD84_RS13495 pilA 2873997..2874401 (+) 405 WP_015297250.1 pilin Machinery gene
  QZD84_RS13500 pilB 2874401..2876086 (+) 1686 WP_020835398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QZD84_RS13505 - 2876110..2877332 (+) 1223 Protein_2624 type II secretion system F family protein -
  QZD84_RS13510 pilD 2877397..2878266 (+) 870 WP_308386333.1 A24 family peptidase Machinery gene
  QZD84_RS13515 coaE 2878267..2878881 (+) 615 WP_005480887.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 13659.55 Da        Isoelectric Point: 6.4433

>NTDB_id=916978 QZD84_RS13495 WP_015297250.1 2873997..2874401(+) (pilA) [Vibrio parahaemolyticus strain BM26A]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=916978 QZD84_RS13495 WP_015297250.1 2873997..2874401(+) (pilA) [Vibrio parahaemolyticus strain BM26A]
ATGAAACACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTAGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(40-130)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio parahaemolyticus RIMD 2210633

52.143

100

0.545
  pilA Pseudomonas aeruginosa PAK

42.446

100

0.44
  pilA Vibrio cholerae strain A1552

42.029

100

0.433
  pilA Vibrio cholerae C6706

42.029

100

0.433
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

42.029

100

0.433
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.188

95.522

0.403
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.535

96.269

0.381