Detailed information NTG0916980

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QZD84_RS13510
• Genome accession: NZ_CP141290
• Coordinates: 2877397..2878266 (+)
• Length: 289 a.a.
• NCBI ID: WP_308386333.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM26A
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2872397..2883266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZD84_RS13490	nadC	2872847..2873734 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QZD84_RS13495	pilA	2873997..2874401 (+)	405	WP_015297250.1	pilin	Machinery gene
QZD84_RS13500	pilB	2874401..2876086 (+)	1686	WP_020835398.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QZD84_RS13505	-	2876110..2877332 (+)	1223	Protein_2624	type II secretion system F family protein	-
QZD84_RS13510	pilD	2877397..2878266 (+)	870	WP_308386333.1	A24 family peptidase	Machinery gene
QZD84_RS13515	coaE	2878267..2878881 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
QZD84_RS13520	zapD	2878909..2879649 (+)	741	WP_015297254.1	cell division protein ZapD	-
QZD84_RS13525	yacG	2879718..2879912 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
QZD84_RS13530	rplS	2880291..2880644 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
QZD84_RS13535	trmD	2880686..2881429 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QZD84_RS13540	rimM	2881457..2882005 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
QZD84_RS13545	rpsP	2882034..2882282 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32313.43 Da
• Isoelectric Point: 7.1970

>NTDB_id=916980 QZD84_RS13510 WP_308386333.1 2877397..2878266(+) (pilD) [Vibrio parahaemolyticus strain BM26A]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEIGPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=916980 QZD84_RS13510 WP_308386333.1 2877397..2878266(+) (pilD) [Vibrio parahaemolyticus strain BM26A]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAGGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCCGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45