Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   U4959_RS14825 Genome accession   NZ_CP141284
Coordinates   3071040..3073175 (-) Length   711 a.a.
NCBI ID   WP_324273067.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3066040..3078175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS14810 (U4959_14810) - 3068465..3069340 (-) 876 WP_279684724.1 hypothetical protein -
  U4959_RS14815 (U4959_14815) aroB 3069357..3070439 (-) 1083 WP_324272891.1 3-dehydroquinate synthase -
  U4959_RS14820 (U4959_14820) aroK 3070460..3071020 (-) 561 WP_324272892.1 shikimate kinase AroK -
  U4959_RS14825 (U4959_14825) pilQ 3071040..3073175 (-) 2136 WP_324273067.1 type IV pilus secretin PilQ family protein Machinery gene
  U4959_RS14830 (U4959_14830) pilP 3073237..3073764 (-) 528 WP_324272893.1 pilus assembly protein PilP Machinery gene
  U4959_RS14835 (U4959_14835) pilO 3073764..3074504 (-) 741 WP_324272894.1 type 4a pilus biogenesis protein PilO Machinery gene
  U4959_RS14840 (U4959_14840) pilN 3074501..3075145 (-) 645 WP_324272895.1 PilN domain-containing protein Machinery gene
  U4959_RS14845 (U4959_14845) pilM 3075145..3076203 (-) 1059 WP_004909635.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77110.39 Da        Isoelectric Point: 5.7139

>NTDB_id=916896 U4959_RS14825 WP_324273067.1 3071040..3073175(-) (pilQ) [Acinetobacter junii strain H1]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSINVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPALITNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVTELIKAEEDEAKAIAQSVKLAPLQTEYIQLSYAKAADIEKLITQGKNSSANSNQGSSGSSLGDSV
GSLLSPRGTVSIDPRTNTLIINDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGISSNNDLL
VGGSDTTLWNLRDPEKDEDTGGWKYEIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKV
LTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFINATLSLDVTPSITPEGKVMMKLNITKDSPGNPTPTGQLTINKNTI
DTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=916896 U4959_RS14825 WP_324273067.1 3071040..3073175(-) (pilQ) [Acinetobacter junii strain H1]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACATCCATT
CCTGTTTCAACCAATGAAGCAAGTTCAATCAATGTGGCTGCAGATGATCAGCGTGCTCGTTTGATCGTGAATCTAAAGGA
TTCTGGTGCATTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCAGCAAAACCAGCTTTAATCACTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGGGTTTCCAATATTGGTTTTCAACGAGGAAATCAAGGTGAAGGACTA
GTTGTTATCGATTTATTGGGGGGTAATACACCAGTAGATGTACAACAACAAGGAAGTAAAATTGTTGTTCGTACTCTTGG
AAATAAAATCCCAACGCACTTGGCGCGTCGTTTAAATACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ACGACAAAGGAAATGGGGTTATTACTATTCAATCTGCGGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAATCACCGAATAAAGCTAAACCACAGACCTATACTGGAAATAAAATTTCATT
GGATTTCCAAGATATTGAAGTCCGCCGTGTTTTGCAATTATTAGCAGACTTTACAGGAATCAATATGGTTGCTGCTGATA
CTGTACAAGGAAATATTACGCTACGTCTTAAAGATGTTCCTTGGGATCAAGCTCTTGACATTGTTTTGAAAACAAAAAAT
TTGGATAAGCGTCGTAACGGAAATGTGATTTGGATTGCACCTGTTACGGAGTTGATCAAAGCGGAGGAGGATGAGGCGAA
AGCAATTGCTCAAAGTGTGAAACTTGCACCTTTGCAAACAGAATATATTCAATTGAGTTATGCGAAGGCGGCAGATATTG
AAAAACTAATTACTCAGGGTAAAAATAGCTCAGCTAATAGTAATCAGGGAAGTAGTGGATCCTCTTTAGGTGATAGCGTA
GGTAGTTTATTGAGCCCACGCGGAACGGTTTCGATTGACCCACGTACAAATACTTTGATTATAAATGATACATCTCAAAA
GATTGATCAGATCCGTAAGATGATCGATTTGCTTGATGTATCGGTTAAACAAGTGATGATTGAAGCACGTATTGTGCGTG
CAAGTACAGACTTTACCAAAGAGATGGGGGTAAAGTGGGGGATATTGTCGCAAGGTATATCTTCAAACAATGATCTTCTA
GTTGGTGGTAGTGATACAACTTTATGGAATCTCCGTGATCCAGAAAAAGATGAGGATACAGGTGGTTGGAAATATGAGAT
TGAACGTCCCGATAACTTAAATGTAAATTTAGGTGCTGTAACTCCTGGTGCGAGTCGTATAGCTTTTGGCTTGATTAGTC
TTTCAGATTTTATGTTGGACTTAGAGTTATCAGCAGTTCAAGCTGATGGCTATGGTGAGGTAATCTCAACTCCGAAAGTT
TTAACTGCTGATAAACAAGCTGCAAAAATTGAATCAGGAACTCAAATTCCATATTCATCTTCTACTGGTGGTGGAGCAAA
TGCAGTTCCAAAAACGGAGTTCATTAATGCGACATTGAGTTTGGATGTTACACCGAGTATCACCCCTGAAGGTAAAGTGA
TGATGAAATTAAACATCACTAAAGATTCACCTGGAAATCCAACACCTACAGGGCAGCTGACGATTAATAAAAATACAATT
GATACCAATGTCGTGGTTGATAACGGTGAAACTGTTGTTCTTGGTGGAATTTTTGAGCAAGAAAATATTAATTCTCAGAC
CAAAGTTCCATTCTTGGGTGATTTGCCTTATGTTGGGAAATTATTCCGTAGAGAGTCTAAACAAGACAATAAACGCGAGT
TGCTTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-122)

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-444)

Bacterial type II and III secretion system protein (Secretin)

(545-703)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.276

100

0.767
  pilQ Acinetobacter baumannii strain A118

75.276

100

0.767
  comQ Acinetobacter baylyi ADP1

73.574

100

0.744
  pilQ Pseudomonas aeruginosa PAK

40.942

98.594

0.404
  pilQ Legionella pneumophila strain ERS1305867

39.233

95.359

0.374
  pilQ Legionella pneumophila strain Lp02

39.053

95.077

0.371