Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   U4959_RS14840 Genome accession   NZ_CP141284
Coordinates   3074501..3075145 (-) Length   214 a.a.
NCBI ID   WP_324272895.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3069501..3080145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS14820 (U4959_14820) aroK 3070460..3071020 (-) 561 WP_324272892.1 shikimate kinase AroK -
  U4959_RS14825 (U4959_14825) pilQ 3071040..3073175 (-) 2136 WP_324273067.1 type IV pilus secretin PilQ family protein Machinery gene
  U4959_RS14830 (U4959_14830) pilP 3073237..3073764 (-) 528 WP_324272893.1 pilus assembly protein PilP Machinery gene
  U4959_RS14835 (U4959_14835) pilO 3073764..3074504 (-) 741 WP_324272894.1 type 4a pilus biogenesis protein PilO Machinery gene
  U4959_RS14840 (U4959_14840) pilN 3074501..3075145 (-) 645 WP_324272895.1 PilN domain-containing protein Machinery gene
  U4959_RS14845 (U4959_14845) pilM 3075145..3076203 (-) 1059 WP_004909635.1 pilus assembly protein PilM Machinery gene
  U4959_RS14850 (U4959_14850) ponA 3076366..3078945 (+) 2580 WP_004964607.1 penicillin-binding protein PBP1a -
  U4959_RS14855 (U4959_14855) - 3078960..3079778 (-) 819 WP_004964610.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23788.19 Da        Isoelectric Point: 5.1372

>NTDB_id=916899 U4959_RS14840 WP_324272895.1 3074501..3075145(-) (pilN) [Acinetobacter junii strain H1]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVTSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=916899 U4959_RS14840 WP_324272895.1 3074501..3075145(-) (pilN) [Acinetobacter junii strain H1]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATATTGTGTAGG
GGTTGCTGCATTAGGTGTGGCATCGGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGTTTGCAAGGTCAAAGACCTGTCGCTGTACGTTTAATCGATGAATTGGTGCG
AGTTACTCCGCCTACCATGTATTTGACTAAATTTACACGTACAGGCGATAAGTTCACGATTGAAGGTAAAGCTGAAAGTC
CAAACACAGTAGCTGAATTACTGAGAAATCTTGAAGCATCACCTTGGTATCGCAACGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACTGTCACCTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGCACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.168

100

0.762
  comN Acinetobacter baylyi ADP1

72.857

98.131

0.715