Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   U3G77_RS17740 Genome accession   NZ_CP141264
Coordinates   4099663..4100931 (-) Length   422 a.a.
NCBI ID   WP_039273576.1    Uniprot ID   A0A8I1LQ02
Organism   Paenibacillus polymyxa strain DSM 365     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4094663..4105931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3G77_RS17725 (U3G77_17725) rny 4095496..4097040 (-) 1545 WP_013309958.1 ribonuclease Y -
  U3G77_RS17730 (U3G77_17730) - 4097415..4098164 (-) 750 WP_039273574.1 regulatory protein RecX -
  U3G77_RS17735 (U3G77_17735) recA 4098360..4099421 (-) 1062 WP_023988239.1 recombinase RecA Machinery gene
  U3G77_RS17740 (U3G77_17740) cinA 4099663..4100931 (-) 1269 WP_039273576.1 competence/damage-inducible protein A Machinery gene
  U3G77_RS17745 (U3G77_17745) pgsA 4101027..4101614 (-) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  U3G77_RS17750 (U3G77_17750) - 4101824..4102315 (-) 492 WP_039273579.1 YajQ family cyclic di-GMP-binding protein -
  U3G77_RS17755 (U3G77_17755) - 4102460..4102624 (-) 165 WP_023988236.1 hypothetical protein -
  U3G77_RS17760 (U3G77_17760) - 4102709..4103797 (-) 1089 WP_039273580.1 RodZ domain-containing protein -
  U3G77_RS17765 (U3G77_17765) - 4103828..4104601 (-) 774 WP_013370747.1 DUF3388 domain-containing protein -
  U3G77_RS17770 (U3G77_17770) - 4104829..4105083 (-) 255 WP_013309950.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46315.27 Da        Isoelectric Point: 4.7168

>NTDB_id=916621 U3G77_RS17740 WP_039273576.1 4099663..4100931(-) (cinA) [Paenibacillus polymyxa strain DSM 365]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKDA
IASVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEFMYASEDVTLEKVIVDLMANRGLTVSAAESCTGGMLMEHLTSIPGSATMFQGGIVCYSNEMKMKLLNVP
CDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=916621 U3G77_RS17740 WP_039273576.1 4099663..4100931(-) (cinA) [Paenibacillus polymyxa strain DSM 365]
ATGAAAGCTGAAATAATTGCGGTAGGAACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGTTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAGATCGGCTTCAGGAAGCCATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTATTTTCTGGCGGTCTGGGACCGACCCAGGATGATTTGACGAAAGATGCG
ATAGCGTCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTTCGTAACCGTGG
GGTAGAAATGACCGAAAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGATGGTAAATTTTATGTAGTTTTGCCTGGACCTCCTAAGGAACTCAAACCGATGTTT
GCAAACCAGGCCAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATTGGTGAGTCAGCTCTTGAAACCCGTTTGTTAGATCTGATCCAATCCCAGACAGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTGATTAAGCTGACGGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAATTTATGTATGCAAGCGAAGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAATCGCGGACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACCTCACTTCTA
TACCTGGCAGTGCTACTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TGTGATTATTTAGAAGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTGGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCCGGACCTGGGTATTCCGAACGTAAGCCAGTCGGTCTAG
TGTATATTGGAATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGCGAAACAATCCGA
CTGCGATCAGTCAAAGCGATTCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

50

97.156

0.486
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.756

97.156

0.483
  cinA Streptococcus pneumoniae R6

49.756

97.156

0.483
  cinA Streptococcus pneumoniae D39

49.512

97.156

0.481
  cinA Bacillus subtilis subsp. subtilis str. 168

49.257

95.735

0.472
  cinA Streptococcus mutans UA159

45.882

100

0.462
  cinA Streptococcus suis isolate S10

44.909

90.758

0.408