Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   U3G77_RS15610 Genome accession   NZ_CP141264
Coordinates   3524557..3526320 (-) Length   587 a.a.
NCBI ID   WP_039275165.1    Uniprot ID   A0A8I1J570
Organism   Paenibacillus polymyxa strain DSM 365     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3519557..3531320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3G77_RS15600 (U3G77_15600) - 3522284..3522592 (-) 309 WP_039275163.1 hypothetical protein -
  U3G77_RS15605 (U3G77_15605) rcrQ 3522714..3524564 (-) 1851 WP_039275164.1 ABC transporter ATP-binding protein Regulator
  U3G77_RS15610 (U3G77_15610) rcrP 3524557..3526320 (-) 1764 WP_039275165.1 ABC transporter ATP-binding protein Regulator
  U3G77_RS15615 (U3G77_15615) - 3526394..3526804 (-) 411 WP_039275166.1 MarR family winged helix-turn-helix transcriptional regulator -
  U3G77_RS15620 (U3G77_15620) - 3527372..3528394 (-) 1023 WP_039275167.1 NADH:flavin oxidoreductase/NADH oxidase -
  U3G77_RS15625 (U3G77_15625) - 3528775..3529647 (-) 873 WP_029518462.1 LysR family transcriptional regulator -
  U3G77_RS15630 (U3G77_15630) dapA 3529762..3530643 (+) 882 WP_029518463.1 4-hydroxy-tetrahydrodipicolinate synthase -
  U3G77_RS15635 (U3G77_15635) - 3531103..3531207 (-) 105 WP_023988604.1 DUF6254 family protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64743.03 Da        Isoelectric Point: 8.1896

>NTDB_id=916617 U3G77_RS15610 WP_039275165.1 3524557..3526320(-) (rcrP) [Paenibacillus polymyxa strain DSM 365]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPMSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANAELTNTNLFANRLMAM
VGPGMTFIMSGLSVSIYWVGTYLINGAAVPDRITLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGVNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=916617 U3G77_RS15610 WP_039275165.1 3524557..3526320(-) (rcrP) [Paenibacillus polymyxa strain DSM 365]
ATGCTAAAGATATTCAAATATCTCAAAAAAAATGAATGGATGCTCGTGCTTTGCAGCCTGGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACAGAAGGAACACCTATGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTCGGCTATTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGTCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCCATGGAAGAGATGAA
CAACTTTTCAACAGCCAGCCTTATCACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAAATTGCGGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTCGCTCTTCCGAGTTTCCAAAAAATCCA
ACGTCTCACCGATAATCTGAACAGAGTAACACGTGAGCATCTGACCGGGCTTCGGGTGGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTCGGGCAGGCTAATGCCGAATTGACGAATACAAACCTGTTTGCGAACCGGTTAATGGCAATG
GTTGGCCCGGGTATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGGTTGGCACTTACCTGATTAACGGAGC
GGCCGTGCCGGACCGCATTACGCTATTCTCTAATATGGTCGTATTCTCCTCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATTTTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGTATCGTTAACGGGCATGAGACGACTGGAGAAGAAAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAATATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGTAGCGGCAAAACCAGCGTGATCAATCTAATTCCCCGCTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGATATGTTCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTATGGTGTTAACGGAAGAGCAGGAGCTTCAGAGAAACTCGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTTGAAAAAATGGATGGTCAGTATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAACGGCTGTCGATTGCGCGTGCCATCTACCGACAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCACTAGATTACAGAACAGATCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATTG
TTGGTCAGCGCATAGGCACTATCAAAGACGCTGACCGAATTATCGTGCTGGACCAGGGGGAGATTGTAGGGAGTGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.254

100

0.533