Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   U3G77_RS15605 Genome accession   NZ_CP141264
Coordinates   3522714..3524564 (-) Length   616 a.a.
NCBI ID   WP_039275164.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain DSM 365     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517714..3529564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3G77_RS15600 (U3G77_15600) - 3522284..3522592 (-) 309 WP_039275163.1 hypothetical protein -
  U3G77_RS15605 (U3G77_15605) rcrQ 3522714..3524564 (-) 1851 WP_039275164.1 ABC transporter ATP-binding protein Regulator
  U3G77_RS15610 (U3G77_15610) rcrP 3524557..3526320 (-) 1764 WP_039275165.1 ABC transporter ATP-binding protein Regulator
  U3G77_RS15615 (U3G77_15615) - 3526394..3526804 (-) 411 WP_039275166.1 MarR family winged helix-turn-helix transcriptional regulator -
  U3G77_RS15620 (U3G77_15620) - 3527372..3528394 (-) 1023 WP_039275167.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67878.39 Da        Isoelectric Point: 6.1589

>NTDB_id=916616 U3G77_RS15605 WP_039275164.1 3522714..3524564(-) (rcrQ) [Paenibacillus polymyxa strain DSM 365]
MDKNEHTVDSQQMKMNQPGPMGKGPAGGRGGGEKANNFKKTISQLASYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVFVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFSLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTMKLETAKGDVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=916616 U3G77_RS15605 WP_039275164.1 3522714..3524564(-) (rcrQ) [Paenibacillus polymyxa strain DSM 365]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCCAGGTCCCATGGGCAAAGGTCCCGCGGG
GGGCAGGGGTGGTGGTGAAAAAGCAAATAATTTTAAAAAGACCATCAGCCAGCTTGCATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTCGCTATGGTACTGGCCCTGGTCGGCTCTACCCTCAACGTGATTGGCCCAGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTTTTGTATTAGCGCTTTT
ATATGGATTTGGTCTTATTTTTAACTATTTTCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GAACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACAAACGATGTCGATACCATCGGACAAACGCTAAACAACAGTCTCGGCACGCTTGTTAGTGCGCTGGCCACTTTCGT
GGGAGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTAGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTAGTCAACCAACAGACTATAACCATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCTGCAACCAATCTGCAATCGGCGGCCGCTGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATGAAGCTGGAAACCGCCA
AAGGGGACGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGACCGTATGATTATCAAGGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTGAATTTACTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACTGAT
GAGCAGGTAGAAGCTGCATGTAGAGCGGTGGGACTGCACAGTTTCATTAAAACACTGCCGCAGGGATATGATACAGTTCT
GGATGACAAAGCCAATCTCTCTGCGGGTCAAAAGCAATTGATTACCATTGCAAGGGCGATGATTGAAGATTCACCTATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTTACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTAGCAAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCGTCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.672

93.669

0.531