Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VKI22_RS08520 Genome accession   NZ_CP141254
Coordinates   2000554..2000919 (+) Length   121 a.a.
NCBI ID   WP_015220734.1    Uniprot ID   A0AAF0ZCG7
Organism   Cyanobacterium aponinum UTEX 3221     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1995554..2005919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKI22_RS08500 (VKI22_08500) pgsA 1996245..1996784 (+) 540 WP_015220738.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  VKI22_RS08505 (VKI22_08505) ruvX 1996826..1997257 (+) 432 WP_324283055.1 Holliday junction resolvase RuvX -
  VKI22_RS08510 (VKI22_08510) murA 1997996..1999270 (+) 1275 WP_324283138.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  VKI22_RS08515 (VKI22_08515) hpnH 1999354..2000367 (+) 1014 WP_155084337.1 adenosyl-hopene transferase HpnH -
  VKI22_RS08520 (VKI22_08520) pilH 2000554..2000919 (+) 366 WP_015220734.1 response regulator transcription factor Machinery gene
  VKI22_RS08525 (VKI22_08525) - 2001166..2001702 (+) 537 WP_015220733.1 chemotaxis protein CheW -
  VKI22_RS08530 (VKI22_08530) pilJ 2001768..2004527 (+) 2760 WP_155084339.1 methyl-accepting chemotaxis protein Machinery gene
  VKI22_RS08535 (VKI22_08535) - 2004635..2005399 (+) 765 WP_099435893.1 MlaE family lipid ABC transporter permease subunit -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13740.16 Da        Isoelectric Point: 7.7809

>NTDB_id=916405 VKI22_RS08520 WP_015220734.1 2000554..2000919(+) (pilH) [Cyanobacterium aponinum UTEX 3221]
MSTVLLVEDSIPTRKMISELLTKQGFNVEVATDGIQALEVLPNLRPDLVILDIIMPKMNGYEVCRKIKSDPQTKDLPVII
CSSKGEDFDRYWGIKQGADAYIAKPFREKELIATIKQFLKR

Nucleotide


Download         Length: 366 bp        

>NTDB_id=916405 VKI22_RS08520 WP_015220734.1 2000554..2000919(+) (pilH) [Cyanobacterium aponinum UTEX 3221]
ATGAGTACAGTGTTACTTGTCGAAGATAGTATTCCGACAAGAAAAATGATTTCTGAACTATTAACCAAACAAGGTTTTAA
CGTAGAGGTAGCTACTGATGGAATTCAAGCCTTAGAAGTATTACCTAATCTTCGCCCTGATTTGGTTATATTGGATATTA
TCATGCCTAAAATGAATGGTTACGAAGTATGTCGTAAAATAAAATCTGATCCCCAAACCAAAGATTTACCTGTCATAATT
TGTTCATCAAAAGGAGAAGACTTCGATCGCTATTGGGGTATCAAACAAGGGGCGGATGCCTATATAGCCAAACCTTTCAG
AGAAAAAGAATTAATTGCTACTATTAAACAATTTTTAAAAAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

65.833

99.174

0.653
  scnR Streptococcus mutans UA159

39.344

100

0.397
  pilL-C Synechocystis sp. PCC 6803

38.655

98.347

0.38
  micA Streptococcus pneumoniae Cp1015

37.19

100

0.372
  vicR Streptococcus mutans UA159

36.364

100

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364
  chiS Vibrio cholerae strain A1552

38.938

93.388

0.364