Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   T3H97_RS10300 Genome accession   NZ_CP141152
Coordinates   2230791..2232059 (+) Length   422 a.a.
NCBI ID   WP_328802449.1    Uniprot ID   -
Organism   Paenibacillus sp. LX16     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2225791..2237059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T3H97_RS10270 (T3H97_10270) - 2226649..2226903 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  T3H97_RS10275 (T3H97_10275) - 2227131..2227904 (+) 774 WP_250244779.1 DUF3388 domain-containing protein -
  T3H97_RS10280 (T3H97_10280) - 2227935..2229011 (+) 1077 WP_328802448.1 RodZ family helix-turn-helix domain-containing protein -
  T3H97_RS10285 (T3H97_10285) - 2229096..2229260 (+) 165 WP_023988236.1 hypothetical protein -
  T3H97_RS10290 (T3H97_10290) - 2229406..2229897 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  T3H97_RS10295 (T3H97_10295) pgsA 2230108..2230695 (+) 588 WP_103047844.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  T3H97_RS10300 (T3H97_10300) cinA 2230791..2232059 (+) 1269 WP_328802449.1 competence/damage-inducible protein A Machinery gene
  T3H97_RS10305 (T3H97_10305) recA 2232302..2233363 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  T3H97_RS10310 (T3H97_10310) - 2233560..2234309 (+) 750 WP_328802450.1 RecX family transcriptional regulator -
  T3H97_RS10315 (T3H97_10315) rny 2234684..2236228 (+) 1545 WP_328802451.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46477.49 Da        Isoelectric Point: 4.7819

>NTDB_id=916181 T3H97_RS10300 WP_328802449.1 2230791..2232059(+) (cinA) [Paenibacillus sp. LX16]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IATVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVALEKVIVDLMAKRELTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYTERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=916181 T3H97_RS10300 WP_328802449.1 2230791..2232059(+) (cinA) [Paenibacillus sp. LX16]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGACTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCTATGTTT
GCAAACCAGGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACACATTTGTTAGATCTAATCCAATCCCAGACAGATCCCACGATTGCCCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTGCGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGAACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCATGCGCCGGGTGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCGGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCTGGATATACCGAACGGAAGCCAGTCGGTCTGG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAGCTGAGACTGAGTGGCAACCGCGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAGCTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.412

100

0.457
  cinA Streptococcus suis isolate S10

45.596

91.469

0.417