Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   U5U22_RS18945 Genome accession   NZ_CP140728
Coordinates   3302905..3304143 (+) Length   412 a.a.
NCBI ID   WP_000990715.1    Uniprot ID   Q81WQ3
Organism   Bacillus anthracis strain MH-PR     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3297905..3309143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5U22_RS18915 (U5U22_18910) yfmH 3297957..3299243 (+) 1287 WP_000411960.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  U5U22_RS18920 (U5U22_18915) ymfI 3299347..3300060 (+) 714 WP_000759617.1 elongation factor P 5-aminopentanone reductase -
  U5U22_RS18925 (U5U22_18920) - 3300136..3300384 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  U5U22_RS18930 (U5U22_18925) - 3300524..3301309 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  U5U22_RS18935 (U5U22_18930) - 3301331..3302242 (+) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  U5U22_RS18940 (U5U22_18935) pgsA 3302306..3302884 (+) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  U5U22_RS18945 (U5U22_18940) cinA 3302905..3304143 (+) 1239 WP_000990715.1 competence/damage-inducible protein CinA Machinery gene
  U5U22_RS18950 (U5U22_18945) recA 3304288..3304896 (+) 609 Protein_3390 recombinase RecA -
  U5U22_RS18955 (U5U22_18950) - 3305224..3305646 (+) 423 Protein_3391 DNA recombination/repair protein RecA -
  U5U22_RS18960 (U5U22_18955) rny 3306129..3307691 (+) 1563 WP_000099773.1 ribonuclease Y -
  U5U22_RS18965 (U5U22_18960) - 3307857..3308651 (+) 795 WP_001221090.1 TIGR00282 family metallophosphoesterase -
  U5U22_RS18970 (U5U22_18965) spoVS 3308801..3309061 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45309.55 Da        Isoelectric Point: 4.9485

>NTDB_id=915228 U5U22_RS18945 WP_000990715.1 3302905..3304143(+) (cinA) [Bacillus anthracis strain MH-PR]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGGFFYGYDQEFLHDKAIVLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=915228 U5U22_RS18945 WP_000990715.1 3302905..3304143(+) (cinA) [Bacillus anthracis strain MH-PR]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGGATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGTGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.738

100

0.587
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379